miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18530 3' -57.6 NC_004681.1 + 70801 1.08 0.000841
Target:  5'- gUCGCAUAGCCUCAGCGGUAGCGCGCAc -3'
miRNA:   3'- -AGCGUAUCGGAGUCGCCAUCGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 18316 0.66 0.631038
Target:  5'- -aGC--AGCCUUccgguucguccgguGGCGGUGGCGgGCu -3'
miRNA:   3'- agCGuaUCGGAG--------------UCGCCAUCGCgCGu -5'
18530 3' -57.6 NC_004681.1 + 32221 0.67 0.591426
Target:  5'- -aGCA-GGCCaucgCAGCGGcAGCGCGg- -3'
miRNA:   3'- agCGUaUCGGa---GUCGCCaUCGCGCgu -5'
18530 3' -57.6 NC_004681.1 + 60364 0.67 0.58078
Target:  5'- gCGCGUAaGCCUCucgugGGCacGGUGGCG-GCGa -3'
miRNA:   3'- aGCGUAU-CGGAG-----UCG--CCAUCGCgCGU- -5'
18530 3' -57.6 NC_004681.1 + 67775 0.67 0.559615
Target:  5'- aUGCcUAGCCUCGGCcGUAGCcuccacccggGCGUg -3'
miRNA:   3'- aGCGuAUCGGAGUCGcCAUCG----------CGCGu -5'
18530 3' -57.6 NC_004681.1 + 57437 0.69 0.487616
Target:  5'- cUCGgAUGGCCaaguugUCuGGCGuUAGCGCGCGg -3'
miRNA:   3'- -AGCgUAUCGG------AG-UCGCcAUCGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 27921 0.69 0.473725
Target:  5'- aCGCGgGGCCUCGGCGGcacggcacggcuGUGgGCAu -3'
miRNA:   3'- aGCGUaUCGGAGUCGCCau----------CGCgCGU- -5'
18530 3' -57.6 NC_004681.1 + 37660 0.69 0.458098
Target:  5'- cUGCGgGGCCUCgccAGCGGccGCGCGUc -3'
miRNA:   3'- aGCGUaUCGGAG---UCGCCauCGCGCGu -5'
18530 3' -57.6 NC_004681.1 + 14331 0.68 0.518001
Target:  5'- cCGCGUcAG-CUCAGCcuGGUAGCgGCGUAg -3'
miRNA:   3'- aGCGUA-UCgGAGUCG--CCAUCG-CGCGU- -5'
18530 3' -57.6 NC_004681.1 + 48323 0.68 0.507785
Target:  5'- -gGCG-AGCCUCGGCGagggccagcuuGUAgGCGCGCu -3'
miRNA:   3'- agCGUaUCGGAGUCGC-----------CAU-CGCGCGu -5'
18530 3' -57.6 NC_004681.1 + 61864 0.69 0.487616
Target:  5'- -aGCuccUGGCCgauggCGGCcgcggucuGGUGGCGCGCGa -3'
miRNA:   3'- agCGu--AUCGGa----GUCG--------CCAUCGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 69898 0.69 0.487616
Target:  5'- -gGCAcGGUCUCAGCuaaccaugGGUAcguGCGCGCGg -3'
miRNA:   3'- agCGUaUCGGAGUCG--------CCAU---CGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 13681 0.69 0.458097
Target:  5'- -gGCGUGGCCgcccGCGGccuugaAGCGCGCGu -3'
miRNA:   3'- agCGUAUCGGagu-CGCCa-----UCGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 67104 0.69 0.458097
Target:  5'- gCGCAUGGCCU--GCGacaugaGGCGCGCGu -3'
miRNA:   3'- aGCGUAUCGGAguCGCca----UCGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 57902 0.69 0.438957
Target:  5'- uUCGCca--CCUCGGCGGcgcGGCGCGUg -3'
miRNA:   3'- -AGCGuaucGGAGUCGCCa--UCGCGCGu -5'
18530 3' -57.6 NC_004681.1 + 50487 0.71 0.384419
Target:  5'- gUCGcCGUAGUCguggUAGCGGUAGC-CGCc -3'
miRNA:   3'- -AGC-GUAUCGGa---GUCGCCAUCGcGCGu -5'
18530 3' -57.6 NC_004681.1 + 6196 0.72 0.326726
Target:  5'- aUCGcCAUGGUgUC-GCGGUAgaacGCGCGCAu -3'
miRNA:   3'- -AGC-GUAUCGgAGuCGCCAU----CGCGCGU- -5'
18530 3' -57.6 NC_004681.1 + 30970 0.72 0.326726
Target:  5'- gUCGCGgGGCUcCAGCGGgucGGCGgGCGg -3'
miRNA:   3'- -AGCGUaUCGGaGUCGCCa--UCGCgCGU- -5'
18530 3' -57.6 NC_004681.1 + 4225 0.73 0.289602
Target:  5'- gUUGCG-GGCCUCAGCGGccuGCuuGCGCAu -3'
miRNA:   3'- -AGCGUaUCGGAGUCGCCau-CG--CGCGU- -5'
18530 3' -57.6 NC_004681.1 + 5340 0.66 0.666388
Target:  5'- cUGCAU-GCCcaCAGCGG--GCGCGUAg -3'
miRNA:   3'- aGCGUAuCGGa-GUCGCCauCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.