miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 3' -54.9 NC_004681.1 + 12105 0.66 0.805092
Target:  5'- aUCGG-UGUAGUUCGGCuugguGGCCUuguagcCAGCGg -3'
miRNA:   3'- -GGCUgACGUCAAGCUG-----UCGGA------GUCGC- -5'
18534 3' -54.9 NC_004681.1 + 70793 0.66 0.805092
Target:  5'- uCCG-UUG-AG-UCGcAUAGCCUCAGCGg -3'
miRNA:   3'- -GGCuGACgUCaAGC-UGUCGGAGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 7979 0.66 0.805092
Target:  5'- gCGGCgGCGGUcucaUCGACGGgCgcgggcucuucgUCAGCGg -3'
miRNA:   3'- gGCUGaCGUCA----AGCUGUCgG------------AGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 74215 0.66 0.814311
Target:  5'- aUGA--GCAacguGUUUGACAGCCUCAuGCGu -3'
miRNA:   3'- gGCUgaCGU----CAAGCUGUCGGAGU-CGC- -5'
18534 3' -54.9 NC_004681.1 + 18290 0.66 0.832194
Target:  5'- aCGGCcGCAGUccUCGACuGGCggUCAGCa -3'
miRNA:   3'- gGCUGaCGUCA--AGCUG-UCGg-AGUCGc -5'
18534 3' -54.9 NC_004681.1 + 12807 0.66 0.832194
Target:  5'- aCCGacgcaGCUGCAGcaCGuACGGCCaUUGGCGc -3'
miRNA:   3'- -GGC-----UGACGUCaaGC-UGUCGG-AGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 62072 0.66 0.840839
Target:  5'- aUGACUgugcGCGGcaUGGCGGCCUCcaugGGCGg -3'
miRNA:   3'- gGCUGA----CGUCaaGCUGUCGGAG----UCGC- -5'
18534 3' -54.9 NC_004681.1 + 8941 0.66 0.840839
Target:  5'- gCCuGCUGCAgcGUUCGAcCGGCUUCAccGCc -3'
miRNA:   3'- -GGcUGACGU--CAAGCU-GUCGGAGU--CGc -5'
18534 3' -54.9 NC_004681.1 + 27756 0.66 0.840839
Target:  5'- gUGACgcgcgGCAGcggCGGCAGCggCGGCGc -3'
miRNA:   3'- gGCUGa----CGUCaa-GCUGUCGgaGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 61769 0.66 0.840839
Target:  5'- cUCGGCgGCGGccuccgcggCGGCGGCUUCuGCGc -3'
miRNA:   3'- -GGCUGaCGUCaa-------GCUGUCGGAGuCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.