miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 3' -54.9 NC_004681.1 + 46715 0.72 0.48384
Target:  5'- gCGugUGCGGggCGGgGuCCUCGGCGa -3'
miRNA:   3'- gGCugACGUCaaGCUgUcGGAGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 67309 0.79 0.206364
Target:  5'- cCCGGgUGCGGUUgcCGACAGCCUCAucGCc -3'
miRNA:   3'- -GGCUgACGUCAA--GCUGUCGGAGU--CGc -5'
18534 3' -54.9 NC_004681.1 + 61769 0.66 0.840839
Target:  5'- cUCGGCgGCGGccuccgcggCGGCGGCUUCuGCGc -3'
miRNA:   3'- -GGCUGaCGUCaa-------GCUGUCGGAGuCGC- -5'
18534 3' -54.9 NC_004681.1 + 74215 0.66 0.814311
Target:  5'- aUGA--GCAacguGUUUGACAGCCUCAuGCGu -3'
miRNA:   3'- gGCUgaCGU----CAAGCUGUCGGAGU-CGC- -5'
18534 3' -54.9 NC_004681.1 + 7979 0.66 0.805092
Target:  5'- gCGGCgGCGGUcucaUCGACGGgCgcgggcucuucgUCAGCGg -3'
miRNA:   3'- gGCUGaCGUCA----AGCUGUCgG------------AGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 42337 0.67 0.756607
Target:  5'- -gGACcaGCAGcUCGGCGGCCgUguGCGg -3'
miRNA:   3'- ggCUGa-CGUCaAGCUGUCGG-AguCGC- -5'
18534 3' -54.9 NC_004681.1 + 68555 0.75 0.347382
Target:  5'- aCGACgagGuCAGccuucUUCGGCAGCCUCAGUa -3'
miRNA:   3'- gGCUGa--C-GUC-----AAGCUGUCGGAGUCGc -5'
18534 3' -54.9 NC_004681.1 + 12105 0.66 0.805092
Target:  5'- aUCGG-UGUAGUUCGGCuugguGGCCUuguagcCAGCGg -3'
miRNA:   3'- -GGCUgACGUCAAGCUG-----UCGGA------GUCGC- -5'
18534 3' -54.9 NC_004681.1 + 14660 0.68 0.715577
Target:  5'- gCGACUGCGGccguggUGGCGGUggCGGCGa -3'
miRNA:   3'- gGCUGACGUCaa----GCUGUCGgaGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 47232 0.69 0.641149
Target:  5'- cUCG-C-GCAGUUCGGCgcGGCCcUCGGCGu -3'
miRNA:   3'- -GGCuGaCGUCAAGCUG--UCGG-AGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 26397 0.69 0.67329
Target:  5'- cCCGGC-GCAGUgCGGCcacgucggaugAGUCUCGGUGg -3'
miRNA:   3'- -GGCUGaCGUCAaGCUG-----------UCGGAGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 41766 0.71 0.534808
Target:  5'- aCCucCUGCAcgccuccagGUUCGACGGCCUUcGCGc -3'
miRNA:   3'- -GGcuGACGU---------CAAGCUGUCGGAGuCGC- -5'
18534 3' -54.9 NC_004681.1 + 72099 0.68 0.704044
Target:  5'- cUCGAUUGCAGUcuucaugUC-ACAGCC-CAGCc -3'
miRNA:   3'- -GGCUGACGUCA-------AGcUGUCGGaGUCGc -5'
18534 3' -54.9 NC_004681.1 + 51719 0.68 0.705096
Target:  5'- cCCGGggaacCUGguGgucgUCGGCGGCCgcccCGGCGc -3'
miRNA:   3'- -GGCU-----GACguCa---AGCUGUCGGa---GUCGC- -5'
18534 3' -54.9 NC_004681.1 + 12807 0.66 0.832194
Target:  5'- aCCGacgcaGCUGCAGcaCGuACGGCCaUUGGCGc -3'
miRNA:   3'- -GGC-----UGACGUCaaGC-UGUCGG-AGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 70793 0.66 0.805092
Target:  5'- uCCG-UUG-AG-UCGcAUAGCCUCAGCGg -3'
miRNA:   3'- -GGCuGACgUCaAGC-UGUCGGAGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 63413 0.66 0.80416
Target:  5'- cUCGACUGCGGUccugaauUCccuGGCcaccaggcuuccAGCCUCGGCc -3'
miRNA:   3'- -GGCUGACGUCA-------AG---CUG------------UCGGAGUCGc -5'
18534 3' -54.9 NC_004681.1 + 61362 0.67 0.794751
Target:  5'- cCCGucGCUGCGGUgggCaACAGCUcgcguguccaaggUCGGCGg -3'
miRNA:   3'- -GGC--UGACGUCAa--GcUGUCGG-------------AGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 28143 0.68 0.715577
Target:  5'- gCGGCgGCGGaUCGAgCGGCggCAGCGg -3'
miRNA:   3'- gGCUGaCGUCaAGCU-GUCGgaGUCGC- -5'
18534 3' -54.9 NC_004681.1 + 20170 0.67 0.776438
Target:  5'- cCCGGCUGCgcucGGUgaUCGACuugucGCCcaaUCAGCc -3'
miRNA:   3'- -GGCUGACG----UCA--AGCUGu----CGG---AGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.