miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18535 5' -60.2 NC_004681.1 + 1157 0.68 0.447401
Target:  5'- gGCUCCAuCGGgccguacauccucucGGCGUCCGCGaCGuauuugucAGCGg -3'
miRNA:   3'- gCGAGGU-GCC---------------UCGUAGGCGC-GC--------UCGU- -5'
18535 5' -60.2 NC_004681.1 + 41938 0.67 0.462417
Target:  5'- gGCUCCGCGGAG-AUCgGCcCGcuGCAg -3'
miRNA:   3'- gCGAGGUGCCUCgUAGgCGcGCu-CGU- -5'
18535 5' -60.2 NC_004681.1 + 12413 0.67 0.46907
Target:  5'- gGCUCC-UGGAGCAcgauggucaccucaUCCGUGcCGAGgGu -3'
miRNA:   3'- gCGAGGuGCCUCGU--------------AGGCGC-GCUCgU- -5'
18535 5' -60.2 NC_004681.1 + 17421 0.67 0.481552
Target:  5'- gCGCUgaucCUGCGuGuAGCGUCC-CGCGGGCAc -3'
miRNA:   3'- -GCGA----GGUGC-C-UCGUAGGcGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 19118 0.66 0.520914
Target:  5'- uCGUUCCA-GGuGUcgCCGUcuugGCGAGCAc -3'
miRNA:   3'- -GCGAGGUgCCuCGuaGGCG----CGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 39431 0.66 0.530954
Target:  5'- gGCcCCuCGGAGCcguGUCCaGCGCG-GCGc -3'
miRNA:   3'- gCGaGGuGCCUCG---UAGG-CGCGCuCGU- -5'
18535 5' -60.2 NC_004681.1 + 57983 0.69 0.356961
Target:  5'- cCGCUCCACGucguGAGC-UCCGCGCu---- -3'
miRNA:   3'- -GCGAGGUGC----CUCGuAGGCGCGcucgu -5'
18535 5' -60.2 NC_004681.1 + 65011 0.69 0.356961
Target:  5'- uGCUCCAgGcGGGCG-CCGCGgGAGa- -3'
miRNA:   3'- gCGAGGUgC-CUCGUaGGCGCgCUCgu -5'
18535 5' -60.2 NC_004681.1 + 17716 0.72 0.244531
Target:  5'- aCGUgaaCGCGGGGuCGUCCGCGCccGAGCc -3'
miRNA:   3'- -GCGag-GUGCCUC-GUAGGCGCG--CUCGu -5'
18535 5' -60.2 NC_004681.1 + 73117 0.71 0.26957
Target:  5'- aGUUCUAcucCGGGGCGUaCUGCGCaGAGCAc -3'
miRNA:   3'- gCGAGGU---GCCUCGUA-GGCGCG-CUCGU- -5'
18535 5' -60.2 NC_004681.1 + 28526 0.71 0.276144
Target:  5'- uGCcCCACGcGAGCuccaucUCCGCGgGAGCc -3'
miRNA:   3'- gCGaGGUGC-CUCGu-----AGGCGCgCUCGu -5'
18535 5' -60.2 NC_004681.1 + 70125 0.71 0.278809
Target:  5'- aGCUCCACGcuGAGC-UCCGagacgcgaaagccaGCGGGCAu -3'
miRNA:   3'- gCGAGGUGC--CUCGuAGGCg-------------CGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 61760 0.71 0.289675
Target:  5'- gGcCUCCGCGGcGGCGgcuUCUGCGCGcAGCu -3'
miRNA:   3'- gC-GAGGUGCC-UCGU---AGGCGCGC-UCGu -5'
18535 5' -60.2 NC_004681.1 + 74034 0.7 0.303722
Target:  5'- uGCUCgCGCGGAuGC-UCCGUG-GAGCGg -3'
miRNA:   3'- gCGAG-GUGCCU-CGuAGGCGCgCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 15766 0.7 0.310938
Target:  5'- uGCUCgACGucgccguuGGCGUCUGCGUGAGCc -3'
miRNA:   3'- gCGAGgUGCc-------UCGUAGGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 15162 0.7 0.318285
Target:  5'- aCGCacCCGucUGGGuCAUCUGCGCGAGCAu -3'
miRNA:   3'- -GCGa-GGU--GCCUcGUAGGCGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 16592 0.66 0.551238
Target:  5'- aGUUCCAguugcCGGGGCG-CgGCGcCGAGUAg -3'
miRNA:   3'- gCGAGGU-----GCCUCGUaGgCGC-GCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.