Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18535 | 5' | -60.2 | NC_004681.1 | + | 73933 | 1.08 | 0.000561 |
Target: 5'- cCGCUCCACGGAGCAUCCGCGCGAGCAa -3' miRNA: 3'- -GCGAGGUGCCUCGUAGGCGCGCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 39093 | 0.66 | 0.561469 |
Target: 5'- aGC-CCugGuGGCcacCUGCGCGGGCAa -3' miRNA: 3'- gCGaGGugCcUCGua-GGCGCGCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 60593 | 0.66 | 0.530954 |
Target: 5'- uGCUCgACGaGGCcgCCGCuGCG-GCAc -3' miRNA: 3'- gCGAGgUGCcUCGuaGGCG-CGCuCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 33658 | 0.66 | 0.530954 |
Target: 5'- ---cUCACGGAGCAgguggcgaaccUCCGCGCGcGUg -3' miRNA: 3'- gcgaGGUGCCUCGU-----------AGGCGCGCuCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 14477 | 0.66 | 0.523918 |
Target: 5'- cCGcCUCCGCcGAGCAgggcgcgcugguggCCggugcugGCGCGAGCAa -3' miRNA: 3'- -GC-GAGGUGcCUCGUa-------------GG-------CGCGCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 6500 | 0.67 | 0.495172 |
Target: 5'- uCGCUCCACGGAcucggggaagaccgaGCcgCgGCGCcucauGCAg -3' miRNA: 3'- -GCGAGGUGCCU---------------CGuaGgCGCGcu---CGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 72688 | 0.67 | 0.481552 |
Target: 5'- aCGCUCCACaGuGaauucUCCGCGCGcGGUAg -3' miRNA: 3'- -GCGAGGUGcCuCgu---AGGCGCGC-UCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 37648 | 0.67 | 0.478657 |
Target: 5'- gCGCUCCgacuucuGCGGGGCcucgccagcggCCGCGCGucGCu -3' miRNA: 3'- -GCGAGG-------UGCCUCGua---------GGCGCGCu-CGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 70650 | 0.67 | 0.471936 |
Target: 5'- uGCcCgCACGG-GCAUaucCCGUGCGGGCu -3' miRNA: 3'- gCGaG-GUGCCuCGUA---GGCGCGCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 61669 | 0.68 | 0.44369 |
Target: 5'- cCGCcgCCGCGGAgGCcgCCGC-CGAGg- -3' miRNA: 3'- -GCGa-GGUGCCU-CGuaGGCGcGCUCgu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 41817 | 0.68 | 0.44369 |
Target: 5'- cCGcCUCC-CGGGGCAUuuccCUGCaGCGGGCc -3' miRNA: 3'- -GC-GAGGuGCCUCGUA----GGCG-CGCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 22620 | 0.72 | 0.244531 |
Target: 5'- -uCUCCACGGAcaccgcggGCAgcgCCGCGCGcaAGCAg -3' miRNA: 3'- gcGAGGUGCCU--------CGUa--GGCGCGC--UCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 74720 | 0.72 | 0.250604 |
Target: 5'- aCGCUUgcaagCACuGGAGCAUCCGgcCGCGGGUg -3' miRNA: 3'- -GCGAG-----GUG-CCUCGUAGGC--GCGCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 71716 | 0.71 | 0.26957 |
Target: 5'- cCGCUCCGCuGAGUuccacgcUCCGCGCGuAGUc -3' miRNA: 3'- -GCGAGGUGcCUCGu------AGGCGCGC-UCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 68357 | 0.7 | 0.340324 |
Target: 5'- aGCUCUGCGGAGCccggacaAUCUGCGUGGa-- -3' miRNA: 3'- gCGAGGUGCCUCG-------UAGGCGCGCUcgu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 16296 | 0.69 | 0.356961 |
Target: 5'- aGCUCCcCGaGGGCAUCCcCGCG-GCc -3' miRNA: 3'- gCGAGGuGC-CUCGUAGGcGCGCuCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 3400 | 0.69 | 0.390199 |
Target: 5'- aGUuggCCGCGGcGC--CCGCGCGAGCc -3' miRNA: 3'- gCGa--GGUGCCuCGuaGGCGCGCUCGu -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 18260 | 0.68 | 0.44369 |
Target: 5'- aGCUUCA-GGAGCGgcaacUCCGgGCGcGGCAc -3' miRNA: 3'- gCGAGGUgCCUCGU-----AGGCgCGC-UCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 16592 | 0.66 | 0.551238 |
Target: 5'- aGUUCCAguugcCGGGGCG-CgGCGcCGAGUAg -3' miRNA: 3'- gCGAGGU-----GCCUCGUaGgCGC-GCUCGU- -5' |
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18535 | 5' | -60.2 | NC_004681.1 | + | 73117 | 0.71 | 0.26957 |
Target: 5'- aGUUCUAcucCGGGGCGUaCUGCGCaGAGCAc -3' miRNA: 3'- gCGAGGU---GCCUCGUA-GGCGCG-CUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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