miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18535 5' -60.2 NC_004681.1 + 1157 0.68 0.447401
Target:  5'- gGCUCCAuCGGgccguacauccucucGGCGUCCGCGaCGuauuugucAGCGg -3'
miRNA:   3'- gCGAGGU-GCC---------------UCGUAGGCGC-GC--------UCGU- -5'
18535 5' -60.2 NC_004681.1 + 3400 0.69 0.390199
Target:  5'- aGUuggCCGCGGcGC--CCGCGCGAGCc -3'
miRNA:   3'- gCGa--GGUGCCuCGuaGGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 6500 0.67 0.495172
Target:  5'- uCGCUCCACGGAcucggggaagaccgaGCcgCgGCGCcucauGCAg -3'
miRNA:   3'- -GCGAGGUGCCU---------------CGuaGgCGCGcu---CGU- -5'
18535 5' -60.2 NC_004681.1 + 8479 0.68 0.425396
Target:  5'- aGCUCCG-GGuuCAUgaugaCCGCGCGAGCc -3'
miRNA:   3'- gCGAGGUgCCucGUA-----GGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 12413 0.67 0.46907
Target:  5'- gGCUCC-UGGAGCAcgauggucaccucaUCCGUGcCGAGgGu -3'
miRNA:   3'- gCGAGGuGCCUCGU--------------AGGCGC-GCUCgU- -5'
18535 5' -60.2 NC_004681.1 + 14477 0.66 0.523918
Target:  5'- cCGcCUCCGCcGAGCAgggcgcgcugguggCCggugcugGCGCGAGCAa -3'
miRNA:   3'- -GC-GAGGUGcCUCGUa-------------GG-------CGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 14567 0.69 0.365082
Target:  5'- uGCUCgGCGGAgGCggCgCGCGCG-GCGu -3'
miRNA:   3'- gCGAGgUGCCU-CGuaG-GCGCGCuCGU- -5'
18535 5' -60.2 NC_004681.1 + 15162 0.7 0.318285
Target:  5'- aCGCacCCGucUGGGuCAUCUGCGCGAGCAu -3'
miRNA:   3'- -GCGa-GGU--GCCUcGUAGGCGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 15766 0.7 0.310938
Target:  5'- uGCUCgACGucgccguuGGCGUCUGCGUGAGCc -3'
miRNA:   3'- gCGAGgUGCc-------UCGUAGGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 16296 0.69 0.356961
Target:  5'- aGCUCCcCGaGGGCAUCCcCGCG-GCc -3'
miRNA:   3'- gCGAGGuGC-CUCGUAGGcGCGCuCGu -5'
18535 5' -60.2 NC_004681.1 + 16592 0.66 0.551238
Target:  5'- aGUUCCAguugcCGGGGCG-CgGCGcCGAGUAg -3'
miRNA:   3'- gCGAGGU-----GCCUCGUaGgCGC-GCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 17421 0.67 0.481552
Target:  5'- gCGCUgaucCUGCGuGuAGCGUCC-CGCGGGCAc -3'
miRNA:   3'- -GCGA----GGUGC-C-UCGUAGGcGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 17716 0.72 0.244531
Target:  5'- aCGUgaaCGCGGGGuCGUCCGCGCccGAGCc -3'
miRNA:   3'- -GCGag-GUGCCUC-GUAGGCGCG--CUCGu -5'
18535 5' -60.2 NC_004681.1 + 18260 0.68 0.44369
Target:  5'- aGCUUCA-GGAGCGgcaacUCCGgGCGcGGCAc -3'
miRNA:   3'- gCGAGGUgCCUCGU-----AGGCgCGC-UCGU- -5'
18535 5' -60.2 NC_004681.1 + 19118 0.66 0.520914
Target:  5'- uCGUUCCA-GGuGUcgCCGUcuugGCGAGCAc -3'
miRNA:   3'- -GCGAGGUgCCuCGuaGGCG----CGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 22620 0.72 0.244531
Target:  5'- -uCUCCACGGAcaccgcggGCAgcgCCGCGCGcaAGCAg -3'
miRNA:   3'- gcGAGGUGCCU--------CGUa--GGCGCGC--UCGU- -5'
18535 5' -60.2 NC_004681.1 + 28526 0.71 0.276144
Target:  5'- uGCcCCACGcGAGCuccaucUCCGCGgGAGCc -3'
miRNA:   3'- gCGaGGUGC-CUCGu-----AGGCGCgCUCGu -5'
18535 5' -60.2 NC_004681.1 + 33658 0.66 0.530954
Target:  5'- ---cUCACGGAGCAgguggcgaaccUCCGCGCGcGUg -3'
miRNA:   3'- gcgaGGUGCCUCGU-----------AGGCGCGCuCGu -5'
18535 5' -60.2 NC_004681.1 + 37648 0.67 0.478657
Target:  5'- gCGCUCCgacuucuGCGGGGCcucgccagcggCCGCGCGucGCu -3'
miRNA:   3'- -GCGAGG-------UGCCUCGua---------GGCGCGCu-CGu -5'
18535 5' -60.2 NC_004681.1 + 39093 0.66 0.561469
Target:  5'- aGC-CCugGuGGCcacCUGCGCGGGCAa -3'
miRNA:   3'- gCGaGGugCcUCGua-GGCGCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.