miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18535 5' -60.2 NC_004681.1 + 73933 1.08 0.000561
Target:  5'- cCGCUCCACGGAGCAUCCGCGCGAGCAa -3'
miRNA:   3'- -GCGAGGUGCCUCGUAGGCGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 22620 0.72 0.244531
Target:  5'- -uCUCCACGGAcaccgcggGCAgcgCCGCGCGcaAGCAg -3'
miRNA:   3'- gcGAGGUGCCU--------CGUa--GGCGCGC--UCGU- -5'
18535 5' -60.2 NC_004681.1 + 17716 0.72 0.244531
Target:  5'- aCGUgaaCGCGGGGuCGUCCGCGCccGAGCc -3'
miRNA:   3'- -GCGag-GUGCCUC-GUAGGCGCG--CUCGu -5'
18535 5' -60.2 NC_004681.1 + 74720 0.72 0.250604
Target:  5'- aCGCUUgcaagCACuGGAGCAUCCGgcCGCGGGUg -3'
miRNA:   3'- -GCGAG-----GUG-CCUCGUAGGC--GCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 71716 0.71 0.26957
Target:  5'- cCGCUCCGCuGAGUuccacgcUCCGCGCGuAGUc -3'
miRNA:   3'- -GCGAGGUGcCUCGu------AGGCGCGC-UCGu -5'
18535 5' -60.2 NC_004681.1 + 73117 0.71 0.26957
Target:  5'- aGUUCUAcucCGGGGCGUaCUGCGCaGAGCAc -3'
miRNA:   3'- gCGAGGU---GCCUCGUA-GGCGCG-CUCGU- -5'
18535 5' -60.2 NC_004681.1 + 28526 0.71 0.276144
Target:  5'- uGCcCCACGcGAGCuccaucUCCGCGgGAGCc -3'
miRNA:   3'- gCGaGGUGC-CUCGu-----AGGCGCgCUCGu -5'
18535 5' -60.2 NC_004681.1 + 70125 0.71 0.278809
Target:  5'- aGCUCCACGcuGAGC-UCCGagacgcgaaagccaGCGGGCAu -3'
miRNA:   3'- gCGAGGUGC--CUCGuAGGCg-------------CGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 61760 0.71 0.289675
Target:  5'- gGcCUCCGCGGcGGCGgcuUCUGCGCGcAGCu -3'
miRNA:   3'- gC-GAGGUGCC-UCGU---AGGCGCGC-UCGu -5'
18535 5' -60.2 NC_004681.1 + 74034 0.7 0.303722
Target:  5'- uGCUCgCGCGGAuGC-UCCGUG-GAGCGg -3'
miRNA:   3'- gCGAG-GUGCCU-CGuAGGCGCgCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 15766 0.7 0.310938
Target:  5'- uGCUCgACGucgccguuGGCGUCUGCGUGAGCc -3'
miRNA:   3'- gCGAGgUGCc-------UCGUAGGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 15162 0.7 0.318285
Target:  5'- aCGCacCCGucUGGGuCAUCUGCGCGAGCAu -3'
miRNA:   3'- -GCGa-GGU--GCCUcGUAGGCGCGCUCGU- -5'
18535 5' -60.2 NC_004681.1 + 68357 0.7 0.340324
Target:  5'- aGCUCUGCGGAGCccggacaAUCUGCGUGGa-- -3'
miRNA:   3'- gCGAGGUGCCUCG-------UAGGCGCGCUcgu -5'
18535 5' -60.2 NC_004681.1 + 16296 0.69 0.356961
Target:  5'- aGCUCCcCGaGGGCAUCCcCGCG-GCc -3'
miRNA:   3'- gCGAGGuGC-CUCGUAGGcGCGCuCGu -5'
18535 5' -60.2 NC_004681.1 + 57983 0.69 0.356961
Target:  5'- cCGCUCCACGucguGAGC-UCCGCGCu---- -3'
miRNA:   3'- -GCGAGGUGC----CUCGuAGGCGCGcucgu -5'
18535 5' -60.2 NC_004681.1 + 65011 0.69 0.356961
Target:  5'- uGCUCCAgGcGGGCG-CCGCGgGAGa- -3'
miRNA:   3'- gCGAGGUgC-CUCGUaGGCGCgCUCgu -5'
18535 5' -60.2 NC_004681.1 + 14567 0.69 0.365082
Target:  5'- uGCUCgGCGGAgGCggCgCGCGCG-GCGu -3'
miRNA:   3'- gCGAGgUGCCU-CGuaG-GCGCGCuCGU- -5'
18535 5' -60.2 NC_004681.1 + 3400 0.69 0.390199
Target:  5'- aGUuggCCGCGGcGC--CCGCGCGAGCc -3'
miRNA:   3'- gCGa--GGUGCCuCGuaGGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 8479 0.68 0.425396
Target:  5'- aGCUCCG-GGuuCAUgaugaCCGCGCGAGCc -3'
miRNA:   3'- gCGAGGUgCCucGUA-----GGCGCGCUCGu -5'
18535 5' -60.2 NC_004681.1 + 61669 0.68 0.44369
Target:  5'- cCGCcgCCGCGGAgGCcgCCGC-CGAGg- -3'
miRNA:   3'- -GCGa-GGUGCCU-CGuaGGCGcGCUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.