miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 5' -55.9 NC_004681.1 + 23788 0.73 0.34901
Target:  5'- -gGGCCACUcuaugUCCGCggaGGCGGGCGCg -3'
miRNA:   3'- gaCUGGUGAu----GGGCGag-UCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 24941 0.71 0.446635
Target:  5'- -cGGCCGCcGCCCGCgccGCcGACGCc -3'
miRNA:   3'- gaCUGGUGaUGGGCGaguCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 25241 0.71 0.446635
Target:  5'- -cGGCCAUggcGCCCGCggCGGCGGuuggguGCGCu -3'
miRNA:   3'- gaCUGGUGa--UGGGCGa-GUCGUC------UGCG- -5'
18537 5' -55.9 NC_004681.1 + 25492 0.66 0.75832
Target:  5'- -gGACUGggUUGgUCGCUCAGCggGGACGCc -3'
miRNA:   3'- gaCUGGU--GAUgGGCGAGUCG--UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 26764 0.7 0.526374
Target:  5'- gUGuCCACU-CCCauuaccggGCUCGGCGGugGUu -3'
miRNA:   3'- gACuGGUGAuGGG--------CGAGUCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 29656 0.71 0.475797
Target:  5'- -aGAUCACUGCCCaCUUGGCGgcGAUGCc -3'
miRNA:   3'- gaCUGGUGAUGGGcGAGUCGU--CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 29866 0.69 0.600166
Target:  5'- gCUGGCUGC-ACCUGg-CAGCAGGuCGCg -3'
miRNA:   3'- -GACUGGUGaUGGGCgaGUCGUCU-GCG- -5'
18537 5' -55.9 NC_004681.1 + 31557 0.69 0.610874
Target:  5'- -gGACCGCgucuaCCGag-AGCAGACGCa -3'
miRNA:   3'- gaCUGGUGaug--GGCgagUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 31678 0.69 0.577775
Target:  5'- gUGACCgGCUGgggugcuucugcgUCUGCUCucGGUAGACGCg -3'
miRNA:   3'- gACUGG-UGAU-------------GGGCGAG--UCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 32550 0.69 0.568231
Target:  5'- -cGuCCACgcgAUCUGCUCAGC-GAUGCc -3'
miRNA:   3'- gaCuGGUGa--UGGGCGAGUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 33093 0.67 0.717388
Target:  5'- -aGGCCGCUACCgGggUAGCuGACa- -3'
miRNA:   3'- gaCUGGUGAUGGgCgaGUCGuCUGcg -5'
18537 5' -55.9 NC_004681.1 + 35027 0.69 0.578837
Target:  5'- gUGACCGCgcauauaccagACuuGCUCGccGCGGACGg -3'
miRNA:   3'- gACUGGUGa----------UGggCGAGU--CGUCUGCg -5'
18537 5' -55.9 NC_004681.1 + 35896 0.66 0.738057
Target:  5'- cCUGGCCGCgcCCCGCaauggAGuCGGACGa -3'
miRNA:   3'- -GACUGGUGauGGGCGag---UC-GUCUGCg -5'
18537 5' -55.9 NC_004681.1 + 38055 0.66 0.738057
Target:  5'- -cGGCCucgggGCUgACUCGCUC-GCuGACGCu -3'
miRNA:   3'- gaCUGG-----UGA-UGGGCGAGuCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 38920 0.66 0.748245
Target:  5'- gCUG-CCGCcguagGCCCGgaugguCUCGGCGGACuuGCg -3'
miRNA:   3'- -GACuGGUGa----UGGGC------GAGUCGUCUG--CG- -5'
18537 5' -55.9 NC_004681.1 + 41672 0.74 0.317484
Target:  5'- -cGugCGCUGCCUGCg-GGguGGCGCu -3'
miRNA:   3'- gaCugGUGAUGGGCGagUCguCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 42146 0.72 0.427756
Target:  5'- gCUGACUggagcGCUGCaCUGCUCAGguuGGCGCg -3'
miRNA:   3'- -GACUGG-----UGAUG-GGCGAGUCgu-CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 43940 0.73 0.382705
Target:  5'- uUGGCCuCcACCUuuUCAGCGGACGCu -3'
miRNA:   3'- gACUGGuGaUGGGcgAGUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 44064 0.67 0.696399
Target:  5'- -cGGCCAUggggUACCUaCUCGGCAGGC-Ca -3'
miRNA:   3'- gaCUGGUG----AUGGGcGAGUCGUCUGcG- -5'
18537 5' -55.9 NC_004681.1 + 45178 0.69 0.610874
Target:  5'- -aGACCGCggcgaggGCCuCGaccgCGGCGGAUGCu -3'
miRNA:   3'- gaCUGGUGa------UGG-GCga--GUCGUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.