miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 5' -55.9 NC_004681.1 + 2119 0.74 0.340923
Target:  5'- aCUGGCCACc-CCCGCUgaugugguaaccCGGCAGguuGCGCg -3'
miRNA:   3'- -GACUGGUGauGGGCGA------------GUCGUC---UGCG- -5'
18537 5' -55.9 NC_004681.1 + 3402 0.68 0.643066
Target:  5'- uUGGCCGCggcGCCCGCgcgAGCcacGCGCg -3'
miRNA:   3'- gACUGGUGa--UGGGCGag-UCGuc-UGCG- -5'
18537 5' -55.9 NC_004681.1 + 7458 0.68 0.650575
Target:  5'- uCUGACCGa---CCGaCUCAGCcaggcccugcguucGGACGCu -3'
miRNA:   3'- -GACUGGUgaugGGC-GAGUCG--------------UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 10135 0.66 0.768273
Target:  5'- gCUGACCaACUACUgGUUCAaGCGcGACa- -3'
miRNA:   3'- -GACUGG-UGAUGGgCGAGU-CGU-CUGcg -5'
18537 5' -55.9 NC_004681.1 + 10533 0.67 0.706928
Target:  5'- -cGACCGCggaauCCCGCa-GGCGGugGa -3'
miRNA:   3'- gaCUGGUGau---GGGCGagUCGUCugCg -5'
18537 5' -55.9 NC_004681.1 + 10645 0.69 0.572468
Target:  5'- aCUGACCGCUGCCUgGCgcccccggugcccgCGGCcGuCGCg -3'
miRNA:   3'- -GACUGGUGAUGGG-CGa-------------GUCGuCuGCG- -5'
18537 5' -55.9 NC_004681.1 + 12216 0.72 0.400345
Target:  5'- -gGACUGCUugCCGaccuuggUCAGCgAGACGCg -3'
miRNA:   3'- gaCUGGUGAugGGCg------AGUCG-UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 14039 0.69 0.587352
Target:  5'- -cGACCACUgauggcgGCCUGaUCGGCacggaguAGACGCa -3'
miRNA:   3'- gaCUGGUGA-------UGGGCgAGUCG-------UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 14230 0.75 0.295278
Target:  5'- --cGCCGCUACCagGCUgAGCuGACGCg -3'
miRNA:   3'- gacUGGUGAUGGg-CGAgUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 14584 0.78 0.191915
Target:  5'- -cGGCCACcagcgcGCCCuGCUCGGCGGAgGCg -3'
miRNA:   3'- gaCUGGUGa-----UGGG-CGAGUCGUCUgCG- -5'
18537 5' -55.9 NC_004681.1 + 14662 0.66 0.787767
Target:  5'- -aGGCgACUGCggCCGUggUGGCGGugGCg -3'
miRNA:   3'- gaCUGgUGAUG--GGCGa-GUCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 15183 0.67 0.675172
Target:  5'- uCUG-CgACga-CUGgUCAGCAGACGCa -3'
miRNA:   3'- -GACuGgUGaugGGCgAGUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 15646 0.69 0.557676
Target:  5'- -aGACCGC-GCgCgagGCUCAcGCAGACGCc -3'
miRNA:   3'- gaCUGGUGaUGgG---CGAGU-CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 16341 0.66 0.768273
Target:  5'- -aGGCCAUc-UCCGCUgCGGCGGugGg -3'
miRNA:   3'- gaCUGGUGauGGGCGA-GUCGUCugCg -5'
18537 5' -55.9 NC_004681.1 + 16692 0.66 0.778092
Target:  5'- -cGAgCACcgGCCUGUUCccggguaugacgGGCGGugGCa -3'
miRNA:   3'- gaCUgGUGa-UGGGCGAG------------UCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 17304 0.66 0.787767
Target:  5'- gCUGGCgCGCgUGCCCGCg----GGACGCu -3'
miRNA:   3'- -GACUG-GUG-AUGGGCGagucgUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 19749 0.66 0.748245
Target:  5'- gCUGAUCGC--CCCGCUguggggugagaAGUGGACGCu -3'
miRNA:   3'- -GACUGGUGauGGGCGAg----------UCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 19922 0.71 0.446635
Target:  5'- -aGGCCACcgcggGCCUGCUCAacacGCAGGUGCu -3'
miRNA:   3'- gaCUGGUGa----UGGGCGAGU----CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 23440 0.68 0.65379
Target:  5'- -cGGCCACU-CCCGCaguucugaUgGGuCGGGCGCc -3'
miRNA:   3'- gaCUGGUGAuGGGCG--------AgUC-GUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 23671 0.67 0.727768
Target:  5'- gCUGGCCucCUacgcGCCCGcCUCcGCGGACa- -3'
miRNA:   3'- -GACUGGu-GA----UGGGC-GAGuCGUCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.