miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 5' -55.9 NC_004681.1 + 58673 0.67 0.696399
Target:  5'- -gGGCCAC-ACCUGCcugauggCGGgGGACGUg -3'
miRNA:   3'- gaCUGGUGaUGGGCGa------GUCgUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 3402 0.68 0.643066
Target:  5'- uUGGCCGCggcGCCCGCgcgAGCcacGCGCg -3'
miRNA:   3'- gACUGGUGa--UGGGCGag-UCGuc-UGCG- -5'
18537 5' -55.9 NC_004681.1 + 7458 0.68 0.650575
Target:  5'- uCUGACCGa---CCGaCUCAGCcaggcccugcguucGGACGCu -3'
miRNA:   3'- -GACUGGUgaugGGC-GAGUCG--------------UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 23440 0.68 0.65379
Target:  5'- -cGGCCACU-CCCGCaguucugaUgGGuCGGGCGCc -3'
miRNA:   3'- gaCUGGUGAuGGGCG--------AgUC-GUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 65061 0.68 0.664496
Target:  5'- -cGuacuCCACgaucCCCGCUCGGguGGuCGCc -3'
miRNA:   3'- gaCu---GGUGau--GGGCGAGUCguCU-GCG- -5'
18537 5' -55.9 NC_004681.1 + 70830 0.67 0.675172
Target:  5'- gUG-UCACggucuCCaCGCUCAGCGGcCGCa -3'
miRNA:   3'- gACuGGUGau---GG-GCGAGUCGUCuGCG- -5'
18537 5' -55.9 NC_004681.1 + 60275 0.67 0.682623
Target:  5'- cCUGGUCACUGCCCcggcgacugaugcaGCgCGGCAGugGg -3'
miRNA:   3'- -GACUGGUGAUGGG--------------CGaGUCGUCugCg -5'
18537 5' -55.9 NC_004681.1 + 57670 0.67 0.68581
Target:  5'- -gGACUg--ACCCGCgCAGCGcucGACGCa -3'
miRNA:   3'- gaCUGGugaUGGGCGaGUCGU---CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 73419 0.67 0.696399
Target:  5'- uUGACCcauGCUGCCaucaGUcCAGCGGACa- -3'
miRNA:   3'- gACUGG---UGAUGGg---CGaGUCGUCUGcg -5'
18537 5' -55.9 NC_004681.1 + 50292 0.68 0.621599
Target:  5'- -gGGCCACgucCCCGC--GGCcGACGCu -3'
miRNA:   3'- gaCUGGUGau-GGGCGagUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 31557 0.69 0.610874
Target:  5'- -gGACCGCgucuaCCGag-AGCAGACGCa -3'
miRNA:   3'- gaCUGGUGaug--GGCgagUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 35027 0.69 0.578837
Target:  5'- gUGACCGCgcauauaccagACuuGCUCGccGCGGACGg -3'
miRNA:   3'- gACUGGUGa----------UGggCGAGU--CGUCUGCg -5'
18537 5' -55.9 NC_004681.1 + 51491 0.78 0.17272
Target:  5'- -cGACCGCUGCCgccaGCUCGGCuacaccGACGCc -3'
miRNA:   3'- gaCUGGUGAUGGg---CGAGUCGu-----CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 14230 0.75 0.295278
Target:  5'- --cGCCGCUACCagGCUgAGCuGACGCg -3'
miRNA:   3'- gacUGGUGAUGGg-CGAgUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 2119 0.74 0.340923
Target:  5'- aCUGGCCACc-CCCGCUgaugugguaaccCGGCAGguuGCGCg -3'
miRNA:   3'- -GACUGGUGauGGGCGA------------GUCGUC---UGCG- -5'
18537 5' -55.9 NC_004681.1 + 19922 0.71 0.446635
Target:  5'- -aGGCCACcgcggGCCUGCUCAacacGCAGGUGCu -3'
miRNA:   3'- gaCUGGUGa----UGGGCGAGU----CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 25241 0.71 0.446635
Target:  5'- -cGGCCAUggcGCCCGCggCGGCGGuuggguGCGCu -3'
miRNA:   3'- gaCUGGUGa--UGGGCGa-GUCGUC------UGCG- -5'
18537 5' -55.9 NC_004681.1 + 26764 0.7 0.526374
Target:  5'- gUGuCCACU-CCCauuaccggGCUCGGCGGugGUu -3'
miRNA:   3'- gACuGGUGAuGGG--------CGAGUCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 15646 0.69 0.557676
Target:  5'- -aGACCGC-GCgCgagGCUCAcGCAGACGCc -3'
miRNA:   3'- gaCUGGUGaUGgG---CGAGU-CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 10645 0.69 0.572468
Target:  5'- aCUGACCGCUGCCUgGCgcccccggugcccgCGGCcGuCGCg -3'
miRNA:   3'- -GACUGGUGAUGGG-CGa-------------GUCGuCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.