miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18537 5' -55.9 NC_004681.1 + 75479 1.12 0.000763
Target:  5'- gCUGACCACUACCCGCUCAGCAGACGCg -3'
miRNA:   3'- -GACUGGUGAUGGGCGAGUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 51491 0.78 0.17272
Target:  5'- -cGACCGCUGCCgccaGCUCGGCuacaccGACGCc -3'
miRNA:   3'- gaCUGGUGAUGGg---CGAGUCGu-----CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 14584 0.78 0.191915
Target:  5'- -cGGCCACcagcgcGCCCuGCUCGGCGGAgGCg -3'
miRNA:   3'- gaCUGGUGa-----UGGG-CGAGUCGUCUgCG- -5'
18537 5' -55.9 NC_004681.1 + 14230 0.75 0.295278
Target:  5'- --cGCCGCUACCagGCUgAGCuGACGCg -3'
miRNA:   3'- gacUGGUGAUGGg-CGAgUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 41672 0.74 0.317484
Target:  5'- -cGugCGCUGCCUGCg-GGguGGCGCu -3'
miRNA:   3'- gaCugGUGAUGGGCGagUCguCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 46408 0.74 0.322843
Target:  5'- cCUGGCCcacgaugcaggaugGCUGCCCGC-CGuggacGUAGACGCa -3'
miRNA:   3'- -GACUGG--------------UGAUGGGCGaGU-----CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 2119 0.74 0.340923
Target:  5'- aCUGGCCACc-CCCGCUgaugugguaaccCGGCAGguuGCGCg -3'
miRNA:   3'- -GACUGGUGauGGGCGA------------GUCGUC---UGCG- -5'
18537 5' -55.9 NC_004681.1 + 23788 0.73 0.34901
Target:  5'- -gGGCCACUcuaugUCCGCggaGGCGGGCGCg -3'
miRNA:   3'- gaCUGGUGAu----GGGCGag-UCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 43940 0.73 0.382705
Target:  5'- uUGGCCuCcACCUuuUCAGCGGACGCu -3'
miRNA:   3'- gACUGGuGaUGGGcgAGUCGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 12216 0.72 0.400345
Target:  5'- -gGACUGCUugCCGaccuuggUCAGCgAGACGCg -3'
miRNA:   3'- gaCUGGUGAugGGCg------AGUCG-UCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 42146 0.72 0.427756
Target:  5'- gCUGACUggagcGCUGCaCUGCUCAGguuGGCGCg -3'
miRNA:   3'- -GACUGG-----UGAUG-GGCGAGUCgu-CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 25241 0.71 0.446635
Target:  5'- -cGGCCAUggcGCCCGCggCGGCGGuuggguGCGCu -3'
miRNA:   3'- gaCUGGUGa--UGGGCGa-GUCGUC------UGCG- -5'
18537 5' -55.9 NC_004681.1 + 24941 0.71 0.446635
Target:  5'- -cGGCCGCcGCCCGCgccGCcGACGCc -3'
miRNA:   3'- gaCUGGUGaUGGGCGaguCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 19922 0.71 0.446635
Target:  5'- -aGGCCACcgcggGCCUGCUCAacacGCAGGUGCu -3'
miRNA:   3'- gaCUGGUGa----UGGGCGAGU----CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 29656 0.71 0.475797
Target:  5'- -aGAUCACUGCCCaCUUGGCGgcGAUGCc -3'
miRNA:   3'- gaCUGGUGAUGGGcGAGUCGU--CUGCG- -5'
18537 5' -55.9 NC_004681.1 + 26764 0.7 0.526374
Target:  5'- gUGuCCACU-CCCauuaccggGCUCGGCGGugGUu -3'
miRNA:   3'- gACuGGUGAuGGG--------CGAGUCGUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 63864 0.7 0.53674
Target:  5'- -gGGCCAUgugagcCCCGUUCAGuCGGugGUg -3'
miRNA:   3'- gaCUGGUGau----GGGCGAGUC-GUCugCG- -5'
18537 5' -55.9 NC_004681.1 + 15646 0.69 0.557676
Target:  5'- -aGACCGC-GCgCgagGCUCAcGCAGACGCc -3'
miRNA:   3'- gaCUGGUGaUGgG---CGAGU-CGUCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 32550 0.69 0.568231
Target:  5'- -cGuCCACgcgAUCUGCUCAGC-GAUGCc -3'
miRNA:   3'- gaCuGGUGa--UGGGCGAGUCGuCUGCG- -5'
18537 5' -55.9 NC_004681.1 + 10645 0.69 0.572468
Target:  5'- aCUGACCGCUGCCUgGCgcccccggugcccgCGGCcGuCGCg -3'
miRNA:   3'- -GACUGGUGAUGGG-CGa-------------GUCGuCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.