miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18538 3' -52.5 NC_004681.1 + 75577 1.11 0.001777
Target:  5'- cGCACACACAGCACGCACACAAUCCCAu -3'
miRNA:   3'- -CGUGUGUGUCGUGCGUGUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 5336 0.8 0.224611
Target:  5'- aGCGCGCACAggcGCugGCACGCc-UCCCGg -3'
miRNA:   3'- -CGUGUGUGU---CGugCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 33474 0.78 0.30502
Target:  5'- uGC-CACACGGCGCGCGCGacgcggcCGGUCUCAg -3'
miRNA:   3'- -CGuGUGUGUCGUGCGUGU-------GUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 44521 0.77 0.313475
Target:  5'- cCACGCugGGCGCGCGC---GUCCCAc -3'
miRNA:   3'- cGUGUGugUCGUGCGUGuguUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 39933 0.75 0.407623
Target:  5'- cGCGgGCGCGGUGCGCGCgguGCGGUCCaCGg -3'
miRNA:   3'- -CGUgUGUGUCGUGCGUG---UGUUAGG-GU- -5'
18538 3' -52.5 NC_004681.1 + 69872 0.75 0.44598
Target:  5'- cGUGCGCGCGGC-CGCugGCAAaCCUAc -3'
miRNA:   3'- -CGUGUGUGUCGuGCGugUGUUaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 73097 0.74 0.455881
Target:  5'- -uGCGCAgAGCACGCGC-CAAUCgCCu -3'
miRNA:   3'- cgUGUGUgUCGUGCGUGuGUUAG-GGu -5'
18538 3' -52.5 NC_004681.1 + 39317 0.74 0.455881
Target:  5'- uGCGCGCGCGGCGcCGCGCugGAcacggcUCCgAg -3'
miRNA:   3'- -CGUGUGUGUCGU-GCGUGugUU------AGGgU- -5'
18538 3' -52.5 NC_004681.1 + 14246 0.74 0.486269
Target:  5'- aGCugACGCGGgcugagaacCGCGCAuCGCAGUCCUAc -3'
miRNA:   3'- -CGugUGUGUC---------GUGCGU-GUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 37766 0.74 0.48627
Target:  5'- aGCgACGCGCGGC-CGCugGCGAggcCCCGc -3'
miRNA:   3'- -CG-UGUGUGUCGuGCGugUGUUa--GGGU- -5'
18538 3' -52.5 NC_004681.1 + 28950 0.74 0.496612
Target:  5'- gGCAUACGgAGUugGUgACACAgcAUCCCAa -3'
miRNA:   3'- -CGUGUGUgUCGugCG-UGUGU--UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 74512 0.73 0.517586
Target:  5'- cGCGCACGCcagAGCGUGCGCACAGUgCgCAa -3'
miRNA:   3'- -CGUGUGUG---UCGUGCGUGUGUUAgG-GU- -5'
18538 3' -52.5 NC_004681.1 + 33778 0.73 0.517586
Target:  5'- aGUACAUGCGGuCACGCGCGCGGagguUCgCCAc -3'
miRNA:   3'- -CGUGUGUGUC-GUGCGUGUGUU----AG-GGU- -5'
18538 3' -52.5 NC_004681.1 + 70502 0.73 0.526075
Target:  5'- cGCGCGCGCguggcaauccgaaAGCGCGCgugacaaucuaccGCGCGGUUCCAc -3'
miRNA:   3'- -CGUGUGUG-------------UCGUGCG-------------UGUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 18279 0.71 0.626469
Target:  5'- cCGgGCGCGGCACgGC-CGCAGUCCUc -3'
miRNA:   3'- cGUgUGUGUCGUG-CGuGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 46854 0.71 0.648593
Target:  5'- uGCGCGCGCAGCGC-----CGGUCCCAc -3'
miRNA:   3'- -CGUGUGUGUCGUGcguguGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 46765 0.71 0.648593
Target:  5'- ---gGCGCuGCGCGCGCACGgcgucacggucAUCCCGc -3'
miRNA:   3'- cgugUGUGuCGUGCGUGUGU-----------UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 39840 0.71 0.670656
Target:  5'- cGCGCGCACcGCGCcCGCGCGcgCCa- -3'
miRNA:   3'- -CGUGUGUGuCGUGcGUGUGUuaGGgu -5'
18538 3' -52.5 NC_004681.1 + 22632 0.7 0.692573
Target:  5'- cCGCGgGCAGCGcCGCGCGCAAgcagaucgCCUAc -3'
miRNA:   3'- cGUGUgUGUCGU-GCGUGUGUUa-------GGGU- -5'
18538 3' -52.5 NC_004681.1 + 11859 0.7 0.714254
Target:  5'- gGCAguCGCGGCGCGCGCAgCGua-CCGa -3'
miRNA:   3'- -CGUguGUGUCGUGCGUGU-GUuagGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.