miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18538 3' -52.5 NC_004681.1 + 24568 0.67 0.843081
Target:  5'- uCGCACugGGUGCGCGgCAUcAUCUCGa -3'
miRNA:   3'- cGUGUGugUCGUGCGU-GUGuUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 68574 0.69 0.746132
Target:  5'- gGCACGCcuggagcgACAGCGgGC-CAUAGUCCUc -3'
miRNA:   3'- -CGUGUG--------UGUCGUgCGuGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 55912 0.69 0.75654
Target:  5'- cGC-CGCGCAGguCGUGCGCGugCCCGc -3'
miRNA:   3'- -CGuGUGUGUCguGCGUGUGUuaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 57678 0.69 0.766819
Target:  5'- --cCGCGCAGCGCuCgACGCAAUCCUc -3'
miRNA:   3'- cguGUGUGUCGUGcG-UGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 73175 0.68 0.796772
Target:  5'- gGCACuC-CAGC-CGCGCACc-UCCCGg -3'
miRNA:   3'- -CGUGuGuGUCGuGCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 24775 0.68 0.796772
Target:  5'- cGCAuCGCGCucGCugGCGcCACGGaaauUCCCAu -3'
miRNA:   3'- -CGU-GUGUGu-CGugCGU-GUGUU----AGGGU- -5'
18538 3' -52.5 NC_004681.1 + 16105 0.68 0.806423
Target:  5'- gGCGCGCACAGC-CGC-CACGG-CUg- -3'
miRNA:   3'- -CGUGUGUGUCGuGCGuGUGUUaGGgu -5'
18538 3' -52.5 NC_004681.1 + 3427 0.68 0.81589
Target:  5'- cGCGCGCACGG-ACuaACACAAUCaCUu -3'
miRNA:   3'- -CGUGUGUGUCgUGcgUGUGUUAG-GGu -5'
18538 3' -52.5 NC_004681.1 + 40258 0.68 0.825162
Target:  5'- cCACAC-CAGCACGaCGCACAgcaGUagCCAg -3'
miRNA:   3'- cGUGUGuGUCGUGC-GUGUGU---UAg-GGU- -5'
18538 3' -52.5 NC_004681.1 + 16422 0.69 0.735607
Target:  5'- uGCGC-UACGGCugGCugAUGA-CCCAu -3'
miRNA:   3'- -CGUGuGUGUCGugCGugUGUUaGGGU- -5'
18538 3' -52.5 NC_004681.1 + 11859 0.7 0.714254
Target:  5'- gGCAguCGCGGCGCGCGCAgCGua-CCGa -3'
miRNA:   3'- -CGUguGUGUCGUGCGUGU-GUuagGGU- -5'
18538 3' -52.5 NC_004681.1 + 22632 0.7 0.692573
Target:  5'- cCGCGgGCAGCGcCGCGCGCAAgcagaucgCCUAc -3'
miRNA:   3'- cGUGUgUGUCGU-GCGUGUGUUa-------GGGU- -5'
18538 3' -52.5 NC_004681.1 + 5336 0.8 0.224611
Target:  5'- aGCGCGCACAggcGCugGCACGCc-UCCCGg -3'
miRNA:   3'- -CGUGUGUGU---CGugCGUGUGuuAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 39317 0.74 0.455881
Target:  5'- uGCGCGCGCGGCGcCGCGCugGAcacggcUCCgAg -3'
miRNA:   3'- -CGUGUGUGUCGU-GCGUGugUU------AGGgU- -5'
18538 3' -52.5 NC_004681.1 + 14246 0.74 0.486269
Target:  5'- aGCugACGCGGgcugagaacCGCGCAuCGCAGUCCUAc -3'
miRNA:   3'- -CGugUGUGUC---------GUGCGU-GUGUUAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 28950 0.74 0.496612
Target:  5'- gGCAUACGgAGUugGUgACACAgcAUCCCAa -3'
miRNA:   3'- -CGUGUGUgUCGugCG-UGUGU--UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 74512 0.73 0.517586
Target:  5'- cGCGCACGCcagAGCGUGCGCACAGUgCgCAa -3'
miRNA:   3'- -CGUGUGUG---UCGUGCGUGUGUUAgG-GU- -5'
18538 3' -52.5 NC_004681.1 + 18279 0.71 0.626469
Target:  5'- cCGgGCGCGGCACgGC-CGCAGUCCUc -3'
miRNA:   3'- cGUgUGUGUCGUG-CGuGUGUUAGGGu -5'
18538 3' -52.5 NC_004681.1 + 46765 0.71 0.648593
Target:  5'- ---gGCGCuGCGCGCGCACGgcgucacggucAUCCCGc -3'
miRNA:   3'- cgugUGUGuCGUGCGUGUGU-----------UAGGGU- -5'
18538 3' -52.5 NC_004681.1 + 39840 0.71 0.670656
Target:  5'- cGCGCGCACcGCGCcCGCGCGcgCCa- -3'
miRNA:   3'- -CGUGUGUGuCGUGcGUGUGUuaGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.