Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18542 | 5' | -55.5 | NC_004682.1 | + | 46701 | 1.08 | 0.000911 |
Target: 5'- cCUACCGAGCCGAAAGAACCAGCCCCAc -3' miRNA: 3'- -GAUGGCUCGGCUUUCUUGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 25335 | 0.73 | 0.286633 |
Target: 5'- -aGCCGAcGCUGGAcuGGGACCugaucuacAGCCCCAa -3' miRNA: 3'- gaUGGCU-CGGCUU--UCUUGG--------UCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 45556 | 0.73 | 0.301468 |
Target: 5'- -cGCCgGGGCCGGcguGAGCagCAGCCCCAg -3' miRNA: 3'- gaUGG-CUCGGCUuu-CUUG--GUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 26403 | 0.72 | 0.316104 |
Target: 5'- -cGCCGGGUCGAAcgucggcGGGGCCAGCCg-- -3' miRNA: 3'- gaUGGCUCGGCUU-------UCUUGGUCGGggu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 41873 | 0.72 | 0.324819 |
Target: 5'- -cGCCGAGCCGGAAGccCUcaAGCUCCu -3' miRNA: 3'- gaUGGCUCGGCUUUCuuGG--UCGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 38187 | 0.72 | 0.324819 |
Target: 5'- cCUACgGAGUCGAcagAAGGACCgggggcucuaGGCCCCc -3' miRNA: 3'- -GAUGgCUCGGCU---UUCUUGG----------UCGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 13819 | 0.72 | 0.324819 |
Target: 5'- aUGCCGAGgCGAAGGAGCgAGgCCgGa -3' miRNA: 3'- gAUGGCUCgGCUUUCUUGgUCgGGgU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 35529 | 0.72 | 0.332082 |
Target: 5'- -gACCGGGCCGuagucgauGAACCgguugcuguaguuGGCCCCGa -3' miRNA: 3'- gaUGGCUCGGCuuu-----CUUGG-------------UCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 44095 | 0.71 | 0.366662 |
Target: 5'- cCUGCCuccGUCGGGAGGAUCGGCCCg- -3' miRNA: 3'- -GAUGGcu-CGGCUUUCUUGGUCGGGgu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 22552 | 0.71 | 0.366662 |
Target: 5'- -cGuuGGGUguCGAAGGAcacGCCGGCCCCGa -3' miRNA: 3'- gaUggCUCG--GCUUUCU---UGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 33232 | 0.71 | 0.366662 |
Target: 5'- -gGCCaGGCCGAAAc--CCAGCCCCc -3' miRNA: 3'- gaUGGcUCGGCUUUcuuGGUCGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 23288 | 0.71 | 0.375464 |
Target: 5'- -cAUCGAGCggauCGAAGGAGaCCGGCUCCGc -3' miRNA: 3'- gaUGGCUCG----GCUUUCUU-GGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 48600 | 0.7 | 0.402713 |
Target: 5'- cCUugCGGGCCGguGGGACCuGCUgggCCGg -3' miRNA: 3'- -GAugGCUCGGCuuUCUUGGuCGG---GGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 27452 | 0.7 | 0.410188 |
Target: 5'- gUGCCGAGCCagccuucaAGCuCGGCCCCAg -3' miRNA: 3'- gAUGGCUCGGcuuuc---UUG-GUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 6023 | 0.7 | 0.450804 |
Target: 5'- cCUGCuUGAGCCGuacggGGAGAACUgauGCCCCu -3' miRNA: 3'- -GAUG-GCUCGGC-----UUUCUUGGu--CGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 18618 | 0.69 | 0.460797 |
Target: 5'- -cGCCGAGCUGAAGcGAaaGCUGGCCgCGc -3' miRNA: 3'- gaUGGCUCGGCUUU-CU--UGGUCGGgGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 1637 | 0.69 | 0.460797 |
Target: 5'- -aACgGAGCgGAGAcauGGCCAGCCUCAa -3' miRNA: 3'- gaUGgCUCGgCUUUc--UUGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 45380 | 0.69 | 0.470906 |
Target: 5'- -gGCCGcGCCGAu---GCCGGCCCa- -3' miRNA: 3'- gaUGGCuCGGCUuucuUGGUCGGGgu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 40122 | 0.69 | 0.470906 |
Target: 5'- gCUGCCGAGUCGucaucGAGGucuagGCCggcguugguGGCCCCGa -3' miRNA: 3'- -GAUGGCUCGGCu----UUCU-----UGG---------UCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 33998 | 0.69 | 0.481126 |
Target: 5'- -cACCaGGCCGAuggcGGGugCAGCCgCCAc -3' miRNA: 3'- gaUGGcUCGGCUu---UCUugGUCGG-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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