miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18542 5' -55.5 NC_004682.1 + 49410 0.67 0.632516
Target:  5'- gCUcCCGAG-CGAAGGcuUCAGCCUCAg -3'
miRNA:   3'- -GAuGGCUCgGCUUUCuuGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 417 0.68 0.540172
Target:  5'- -gGCCuucgaGGGCCGGucauacuugacauAGAACCGGCCuCCAg -3'
miRNA:   3'- gaUGG-----CUCGGCUu------------UCUUGGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 26276 0.67 0.5772
Target:  5'- aCUGCUGGGCaaGAGAGGcuCCacaGGCCCCGc -3'
miRNA:   3'- -GAUGGCUCGg-CUUUCUu-GG---UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 36244 0.67 0.588207
Target:  5'- gUACUGAGCgGgcAGGACCGgagcgucguuGUCCCAc -3'
miRNA:   3'- gAUGGCUCGgCuuUCUUGGU----------CGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 42298 0.67 0.592621
Target:  5'- gCUGCCGAcucauGCggaccuuccucggugCGguAGAGCCAGCUCCGc -3'
miRNA:   3'- -GAUGGCU-----CG---------------GCuuUCUUGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 3414 0.67 0.599251
Target:  5'- --uUCGAGaCGAAGGGACUgagguucgacGGCCCCGg -3'
miRNA:   3'- gauGGCUCgGCUUUCUUGG----------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 28787 0.67 0.599251
Target:  5'- -gGCCGucaGGCCGAGAGcggacagggcGAUCAGUCCUg -3'
miRNA:   3'- gaUGGC---UCGGCUUUC----------UUGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 25233 0.67 0.609215
Target:  5'- -gGCgCGAGCCGGA--GACCGGCaagguagCCCAc -3'
miRNA:   3'- gaUG-GCUCGGCUUucUUGGUCG-------GGGU- -5'
18542 5' -55.5 NC_004682.1 + 27905 0.67 0.610323
Target:  5'- aUGCUGAGgCGAAGGGu---GCCCCGc -3'
miRNA:   3'- gAUGGCUCgGCUUUCUugguCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 2439 0.68 0.521954
Target:  5'- -cACCGGGCCGcAAGGucccaagggugauACCGGUgCCAc -3'
miRNA:   3'- gaUGGCUCGGCuUUCU-------------UGGUCGgGGU- -5'
18542 5' -55.5 NC_004682.1 + 3480 0.69 0.501881
Target:  5'- cCUGCUGGGCCGGGAgcggacgguGAACC--CCCCGc -3'
miRNA:   3'- -GAUGGCUCGGCUUU---------CUUGGucGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 6023 0.7 0.450804
Target:  5'- cCUGCuUGAGCCGuacggGGAGAACUgauGCCCCu -3'
miRNA:   3'- -GAUG-GCUCGGC-----UUUCUUGGu--CGGGGu -5'
18542 5' -55.5 NC_004682.1 + 45556 0.73 0.301468
Target:  5'- -cGCCgGGGCCGGcguGAGCagCAGCCCCAg -3'
miRNA:   3'- gaUGG-CUCGGCUuu-CUUG--GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 26403 0.72 0.316104
Target:  5'- -cGCCGGGUCGAAcgucggcGGGGCCAGCCg-- -3'
miRNA:   3'- gaUGGCUCGGCUU-------UCUUGGUCGGggu -5'
18542 5' -55.5 NC_004682.1 + 13819 0.72 0.324819
Target:  5'- aUGCCGAGgCGAAGGAGCgAGgCCgGa -3'
miRNA:   3'- gAUGGCUCgGCUUUCUUGgUCgGGgU- -5'
18542 5' -55.5 NC_004682.1 + 35529 0.72 0.332082
Target:  5'- -gACCGGGCCGuagucgauGAACCgguugcuguaguuGGCCCCGa -3'
miRNA:   3'- gaUGGCUCGGCuuu-----CUUGG-------------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 22552 0.71 0.366662
Target:  5'- -cGuuGGGUguCGAAGGAcacGCCGGCCCCGa -3'
miRNA:   3'- gaUggCUCG--GCUUUCU---UGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 44095 0.71 0.366662
Target:  5'- cCUGCCuccGUCGGGAGGAUCGGCCCg- -3'
miRNA:   3'- -GAUGGcu-CGGCUUUCUUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 33232 0.71 0.366662
Target:  5'- -gGCCaGGCCGAAAc--CCAGCCCCc -3'
miRNA:   3'- gaUGGcUCGGCUUUcuuGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 23288 0.71 0.375464
Target:  5'- -cAUCGAGCggauCGAAGGAGaCCGGCUCCGc -3'
miRNA:   3'- gaUGGCUCG----GCUUUCUU-GGUCGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.