Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18542 | 5' | -55.5 | NC_004682.1 | + | 43706 | 0.66 | 0.68671 |
Target: 5'- -aGCCGAGCgucuucuCGGGcAGGuACCAGCCgCCGu -3' miRNA: 3'- gaUGGCUCG-------GCUU-UCU-UGGUCGG-GGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 48600 | 0.7 | 0.402713 |
Target: 5'- cCUugCGGGCCGguGGGACCuGCUgggCCGg -3' miRNA: 3'- -GAugGCUCGGCuuUCUUGGuCGG---GGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 38187 | 0.72 | 0.324819 |
Target: 5'- cCUACgGAGUCGAcagAAGGACCgggggcucuaGGCCCCc -3' miRNA: 3'- -GAUGgCUCGGCU---UUCUUGG----------UCGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 46701 | 1.08 | 0.000911 |
Target: 5'- cCUACCGAGCCGAAAGAACCAGCCCCAc -3' miRNA: 3'- -GAUGGCUCGGCUUUCUUGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 33097 | 0.67 | 0.5772 |
Target: 5'- uUGCCGAGCUGAgcGAaguucucgACCAGgCCgGg -3' miRNA: 3'- gAUGGCUCGGCUuuCU--------UGGUCgGGgU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 2731 | 0.68 | 0.55969 |
Target: 5'- -cGCCGAGUCGAccGAgugaugcucgccgucACCGGCCUg- -3' miRNA: 3'- gaUGGCUCGGCUuuCU---------------UGGUCGGGgu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 17913 | 0.68 | 0.523019 |
Target: 5'- -gACCGAGCUGGAGcGucACCGGCaCCUg -3' miRNA: 3'- gaUGGCUCGGCUUU-Cu-UGGUCG-GGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 50515 | 0.69 | 0.501881 |
Target: 5'- -gGCCGAGCC--AGGGngaGGCCCCAu -3' miRNA: 3'- gaUGGCUCGGcuUUCUuggUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 45380 | 0.69 | 0.470906 |
Target: 5'- -gGCCGcGCCGAu---GCCGGCCCa- -3' miRNA: 3'- gaUGGCuCGGCUuucuUGGUCGGGgu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 27452 | 0.7 | 0.410188 |
Target: 5'- gUGCCGAGCCagccuucaAGCuCGGCCCCAg -3' miRNA: 3'- gAUGGCUCGGcuuuc---UUG-GUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 40122 | 0.69 | 0.470906 |
Target: 5'- gCUGCCGAGUCGucaucGAGGucuagGCCggcguugguGGCCCCGa -3' miRNA: 3'- -GAUGGCUCGGCu----UUCU-----UGG---------UCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 34487 | 0.69 | 0.491453 |
Target: 5'- -gGCC-AGUCGAccgucguuGAGGGCgCGGCCCCAg -3' miRNA: 3'- gaUGGcUCGGCU--------UUCUUG-GUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 5272 | 0.66 | 0.685612 |
Target: 5'- -cGCCGcGCUGggGcugcugcucacGCCGGCCCCGg -3' miRNA: 3'- gaUGGCuCGGCuuUcu---------UGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 18618 | 0.69 | 0.460797 |
Target: 5'- -cGCCGAGCUGAAGcGAaaGCUGGCCgCGc -3' miRNA: 3'- gaUGGCUCGGCUUU-CU--UGGUCGGgGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 11317 | 0.66 | 0.673506 |
Target: 5'- aCUGCguGGCCGAGGGAAUCaccaccaagcgaaaGGCUCCAc -3' miRNA: 3'- -GAUGgcUCGGCUUUCUUGG--------------UCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 26289 | 0.69 | 0.500834 |
Target: 5'- uUGCCgccguucgacguaGAGCUGAugAAGccCCAGCCCCGg -3' miRNA: 3'- gAUGG-------------CUCGGCU--UUCuuGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 1637 | 0.69 | 0.460797 |
Target: 5'- -aACgGAGCgGAGAcauGGCCAGCCUCAa -3' miRNA: 3'- gaUGgCUCGgCUUUc--UUGGUCGGGGU- -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 41873 | 0.72 | 0.324819 |
Target: 5'- -cGCCGAGCCGGAAGccCUcaAGCUCCu -3' miRNA: 3'- gaUGGCUCGGCUUUCuuGG--UCGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 46364 | 0.67 | 0.588207 |
Target: 5'- -gGCC---CCGGAAGAucuCCAGCCCCc -3' miRNA: 3'- gaUGGcucGGCUUUCUu--GGUCGGGGu -5' |
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18542 | 5' | -55.5 | NC_004682.1 | + | 50367 | 0.68 | 0.552074 |
Target: 5'- -cGCCGgaagcggcccuggaGGCCGcuGGAuACCGGCCCUg -3' miRNA: 3'- gaUGGC--------------UCGGCuuUCU-UGGUCGGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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