miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18542 5' -55.5 NC_004682.1 + 50367 0.68 0.552074
Target:  5'- -cGCCGgaagcggcccuggaGGCCGcuGGAuACCGGCCCUg -3'
miRNA:   3'- gaUGGC--------------UCGGCuuUCU-UGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 417 0.68 0.540172
Target:  5'- -gGCCuucgaGGGCCGGucauacuugacauAGAACCGGCCuCCAg -3'
miRNA:   3'- gaUGG-----CUCGGCUu------------UCUUGGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 17913 0.68 0.523019
Target:  5'- -gACCGAGCUGGAGcGucACCGGCaCCUg -3'
miRNA:   3'- gaUGGCUCGGCUUU-Cu-UGGUCG-GGGu -5'
18542 5' -55.5 NC_004682.1 + 2439 0.68 0.521954
Target:  5'- -cACCGGGCCGcAAGGucccaagggugauACCGGUgCCAc -3'
miRNA:   3'- gaUGGCUCGGCuUUCU-------------UGGUCGgGGU- -5'
18542 5' -55.5 NC_004682.1 + 50515 0.69 0.501881
Target:  5'- -gGCCGAGCC--AGGGngaGGCCCCAu -3'
miRNA:   3'- gaUGGCUCGGcuUUCUuggUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 3480 0.69 0.501881
Target:  5'- cCUGCUGGGCCGGGAgcggacgguGAACC--CCCCGc -3'
miRNA:   3'- -GAUGGCUCGGCUUU---------CUUGGucGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 26289 0.69 0.500834
Target:  5'- uUGCCgccguucgacguaGAGCUGAugAAGccCCAGCCCCGg -3'
miRNA:   3'- gAUGG-------------CUCGGCU--UUCuuGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 34487 0.69 0.491453
Target:  5'- -gGCC-AGUCGAccgucguuGAGGGCgCGGCCCCAg -3'
miRNA:   3'- gaUGGcUCGGCU--------UUCUUG-GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 33998 0.69 0.481126
Target:  5'- -cACCaGGCCGAuggcGGGugCAGCCgCCAc -3'
miRNA:   3'- gaUGGcUCGGCUu---UCUugGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 45380 0.69 0.470906
Target:  5'- -gGCCGcGCCGAu---GCCGGCCCa- -3'
miRNA:   3'- gaUGGCuCGGCUuucuUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 40122 0.69 0.470906
Target:  5'- gCUGCCGAGUCGucaucGAGGucuagGCCggcguugguGGCCCCGa -3'
miRNA:   3'- -GAUGGCUCGGCu----UUCU-----UGG---------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 1637 0.69 0.460797
Target:  5'- -aACgGAGCgGAGAcauGGCCAGCCUCAa -3'
miRNA:   3'- gaUGgCUCGgCUUUc--UUGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 18618 0.69 0.460797
Target:  5'- -cGCCGAGCUGAAGcGAaaGCUGGCCgCGc -3'
miRNA:   3'- gaUGGCUCGGCUUU-CU--UGGUCGGgGU- -5'
18542 5' -55.5 NC_004682.1 + 6023 0.7 0.450804
Target:  5'- cCUGCuUGAGCCGuacggGGAGAACUgauGCCCCu -3'
miRNA:   3'- -GAUG-GCUCGGC-----UUUCUUGGu--CGGGGu -5'
18542 5' -55.5 NC_004682.1 + 27452 0.7 0.410188
Target:  5'- gUGCCGAGCCagccuucaAGCuCGGCCCCAg -3'
miRNA:   3'- gAUGGCUCGGcuuuc---UUG-GUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 48600 0.7 0.402713
Target:  5'- cCUugCGGGCCGguGGGACCuGCUgggCCGg -3'
miRNA:   3'- -GAugGCUCGGCuuUCUUGGuCGG---GGU- -5'
18542 5' -55.5 NC_004682.1 + 23288 0.71 0.375464
Target:  5'- -cAUCGAGCggauCGAAGGAGaCCGGCUCCGc -3'
miRNA:   3'- gaUGGCUCG----GCUUUCUU-GGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 44095 0.71 0.366662
Target:  5'- cCUGCCuccGUCGGGAGGAUCGGCCCg- -3'
miRNA:   3'- -GAUGGcu-CGGCUUUCUUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 22552 0.71 0.366662
Target:  5'- -cGuuGGGUguCGAAGGAcacGCCGGCCCCGa -3'
miRNA:   3'- gaUggCUCG--GCUUUCU---UGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 33232 0.71 0.366662
Target:  5'- -gGCCaGGCCGAAAc--CCAGCCCCc -3'
miRNA:   3'- gaUGGcUCGGCUUUcuuGGUCGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.