Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18543 | 5' | -58 | NC_004682.1 | + | 46129 | 1.12 | 0.00026 |
Target: 5'- cGGCACACGGCGAUCCAGCACCUGCUCg -3' miRNA: 3'- -CCGUGUGCCGCUAGGUCGUGGACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 45633 | 0.77 | 0.100427 |
Target: 5'- cGGUugACGGUGGUgCAGUcgGCCUGCUUc -3' miRNA: 3'- -CCGugUGCCGCUAgGUCG--UGGACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 43632 | 0.75 | 0.140369 |
Target: 5'- cGGCAUgaACGGCGAgCCAGCG--UGCUCa -3' miRNA: 3'- -CCGUG--UGCCGCUaGGUCGUggACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 3440 | 0.75 | 0.144287 |
Target: 5'- cGGCcC-CGGCGAUCCGGaCACCUGgUa -3' miRNA: 3'- -CCGuGuGCCGCUAGGUC-GUGGACgAg -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 34628 | 0.75 | 0.151177 |
Target: 5'- uGGCcCACGccgaugcgccgguuGCGAUCCAGCACCUcGCg- -3' miRNA: 3'- -CCGuGUGC--------------CGCUAGGUCGUGGA-CGag -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 15175 | 0.73 | 0.189271 |
Target: 5'- gGGCAUcaGGCGugaagaacgcCCAGCACCUGUUCa -3' miRNA: 3'- -CCGUGugCCGCua--------GGUCGUGGACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 1543 | 0.72 | 0.227722 |
Target: 5'- cGCACGCGGCGAcgugcUgCGGguCCUGgUCg -3' miRNA: 3'- cCGUGUGCCGCU-----AgGUCguGGACgAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 46484 | 0.72 | 0.227722 |
Target: 5'- cGGUG-ACGGCGGUcaCCAGCGCCUuggugagcgGCUCa -3' miRNA: 3'- -CCGUgUGCCGCUA--GGUCGUGGA---------CGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 7108 | 0.72 | 0.239862 |
Target: 5'- gGGCACgcacugucgACGGCGG-CUGGUACCUGCcCg -3' miRNA: 3'- -CCGUG---------UGCCGCUaGGUCGUGGACGaG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 45823 | 0.71 | 0.25842 |
Target: 5'- uGGCGCACuGGUcgaacgaGAUCCAGUAgcCCUGCg- -3' miRNA: 3'- -CCGUGUG-CCG-------CUAGGUCGU--GGACGag -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 27680 | 0.7 | 0.293877 |
Target: 5'- uGGUgauCGCGGCGAUCCcGCcGCUgugGCUCc -3' miRNA: 3'- -CCGu--GUGCCGCUAGGuCG-UGGa--CGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 26368 | 0.7 | 0.324261 |
Target: 5'- cGGCGCGCaGCGGccUCCuGgAUCUGCUUc -3' miRNA: 3'- -CCGUGUGcCGCU--AGGuCgUGGACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 17704 | 0.69 | 0.365439 |
Target: 5'- cGGCGCuGCaGCaGAUCCAGCcgaugauccccgGCCUGgUCg -3' miRNA: 3'- -CCGUG-UGcCG-CUAGGUCG------------UGGACgAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 21187 | 0.69 | 0.373225 |
Target: 5'- cGGCGCuaccuccACGGCGAagaCCcGCACCcGUUCg -3' miRNA: 3'- -CCGUG-------UGCCGCUa--GGuCGUGGaCGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 3170 | 0.68 | 0.382892 |
Target: 5'- gGGCAcCACGGCGggCCAGgGCgCggGCa- -3' miRNA: 3'- -CCGU-GUGCCGCuaGGUCgUG-Ga-CGag -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 24155 | 0.68 | 0.390924 |
Target: 5'- gGGCAa--GGCGAUCCuggaggacauggcGGCGaagCUGCUCg -3' miRNA: 3'- -CCGUgugCCGCUAGG-------------UCGUg--GACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 10071 | 0.68 | 0.40089 |
Target: 5'- aGGCACAgGGCcuGggCCucaugGGCACCaUGUUCg -3' miRNA: 3'- -CCGUGUgCCG--CuaGG-----UCGUGG-ACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 14611 | 0.68 | 0.410089 |
Target: 5'- cGGUggGCACGGCuGcgCCGaCuCCUGCUCa -3' miRNA: 3'- -CCG--UGUGCCG-CuaGGUcGuGGACGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 20057 | 0.68 | 0.428874 |
Target: 5'- aGGCucGCACGGCucgcaugucGAUcaCCGGCAUCccgGCUCa -3' miRNA: 3'- -CCG--UGUGCCG---------CUA--GGUCGUGGa--CGAG- -5' |
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18543 | 5' | -58 | NC_004682.1 | + | 5817 | 0.67 | 0.447182 |
Target: 5'- cGGCaacaucuggaacgACGCGGUGAcCCGcGCcuACCUGUUCg -3' miRNA: 3'- -CCG-------------UGUGCCGCUaGGU-CG--UGGACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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