miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18543 5' -58 NC_004682.1 + 1543 0.72 0.227722
Target:  5'- cGCACGCGGCGAcgugcUgCGGguCCUGgUCg -3'
miRNA:   3'- cCGUGUGCCGCU-----AgGUCguGGACgAG- -5'
18543 5' -58 NC_004682.1 + 3170 0.68 0.382892
Target:  5'- gGGCAcCACGGCGggCCAGgGCgCggGCa- -3'
miRNA:   3'- -CCGU-GUGCCGCuaGGUCgUG-Ga-CGag -5'
18543 5' -58 NC_004682.1 + 3440 0.75 0.144287
Target:  5'- cGGCcC-CGGCGAUCCGGaCACCUGgUa -3'
miRNA:   3'- -CCGuGuGCCGCUAGGUC-GUGGACgAg -5'
18543 5' -58 NC_004682.1 + 5817 0.67 0.447182
Target:  5'- cGGCaacaucuggaacgACGCGGUGAcCCGcGCcuACCUGUUCg -3'
miRNA:   3'- -CCG-------------UGUGCCGCUaGGU-CG--UGGACGAG- -5'
18543 5' -58 NC_004682.1 + 7108 0.72 0.239862
Target:  5'- gGGCACgcacugucgACGGCGG-CUGGUACCUGCcCg -3'
miRNA:   3'- -CCGUG---------UGCCGCUaGGUCGUGGACGaG- -5'
18543 5' -58 NC_004682.1 + 9388 0.67 0.457977
Target:  5'- --gGCGCGGuCGA-CgAGCGCCUGCg- -3'
miRNA:   3'- ccgUGUGCC-GCUaGgUCGUGGACGag -5'
18543 5' -58 NC_004682.1 + 10071 0.68 0.40089
Target:  5'- aGGCACAgGGCcuGggCCucaugGGCACCaUGUUCg -3'
miRNA:   3'- -CCGUGUgCCG--CuaGG-----UCGUGG-ACGAG- -5'
18543 5' -58 NC_004682.1 + 10404 0.66 0.538116
Target:  5'- aGGUAC-CGGCGucccguugguguUCCuGCACggGCUCa -3'
miRNA:   3'- -CCGUGuGCCGCu-----------AGGuCGUGgaCGAG- -5'
18543 5' -58 NC_004682.1 + 12212 0.66 0.529647
Target:  5'- --aACACGGCGGUCgaCGGCAacggucguccUCUGUUCg -3'
miRNA:   3'- ccgUGUGCCGCUAG--GUCGU----------GGACGAG- -5'
18543 5' -58 NC_004682.1 + 14238 0.66 0.508697
Target:  5'- aGGCGCGuCGGUGGUCCAcGUcaugagacgagGCCagacaaGCUCg -3'
miRNA:   3'- -CCGUGU-GCCGCUAGGU-CG-----------UGGa-----CGAG- -5'
18543 5' -58 NC_004682.1 + 14611 0.68 0.410089
Target:  5'- cGGUggGCACGGCuGcgCCGaCuCCUGCUCa -3'
miRNA:   3'- -CCG--UGUGCCG-CuaGGUcGuGGACGAG- -5'
18543 5' -58 NC_004682.1 + 15175 0.73 0.189271
Target:  5'- gGGCAUcaGGCGugaagaacgcCCAGCACCUGUUCa -3'
miRNA:   3'- -CCGUGugCCGCua--------GGUCGUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 15970 0.67 0.477955
Target:  5'- --aGCACGGCaGAUCC-GCaagGCCgGCUCa -3'
miRNA:   3'- ccgUGUGCCG-CUAGGuCG---UGGaCGAG- -5'
18543 5' -58 NC_004682.1 + 17704 0.69 0.365439
Target:  5'- cGGCGCuGCaGCaGAUCCAGCcgaugauccccgGCCUGgUCg -3'
miRNA:   3'- -CCGUG-UGcCG-CUAGGUCG------------UGGACgAG- -5'
18543 5' -58 NC_004682.1 + 20057 0.68 0.428874
Target:  5'- aGGCucGCACGGCucgcaugucGAUcaCCGGCAUCccgGCUCa -3'
miRNA:   3'- -CCG--UGUGCCG---------CUA--GGUCGUGGa--CGAG- -5'
18543 5' -58 NC_004682.1 + 21187 0.69 0.373225
Target:  5'- cGGCGCuaccuccACGGCGAagaCCcGCACCcGUUCg -3'
miRNA:   3'- -CCGUG-------UGCCGCUa--GGuCGUGGaCGAG- -5'
18543 5' -58 NC_004682.1 + 24155 0.68 0.390924
Target:  5'- gGGCAa--GGCGAUCCuggaggacauggcGGCGaagCUGCUCg -3'
miRNA:   3'- -CCGUgugCCGCUAGG-------------UCGUg--GACGAG- -5'
18543 5' -58 NC_004682.1 + 24996 0.66 0.498353
Target:  5'- gGGUACgACGcCGAcUCggCGGCAUCUGCUCg -3'
miRNA:   3'- -CCGUG-UGCcGCU-AG--GUCGUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 26368 0.7 0.324261
Target:  5'- cGGCGCGCaGCGGccUCCuGgAUCUGCUUc -3'
miRNA:   3'- -CCGUGUGcCGCU--AGGuCgUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 27680 0.7 0.293877
Target:  5'- uGGUgauCGCGGCGAUCCcGCcGCUgugGCUCc -3'
miRNA:   3'- -CCGu--GUGCCGCUAGGuCG-UGGa--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.