miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18543 5' -58 NC_004682.1 + 29906 0.67 0.487084
Target:  5'- cGCcgaACGCGcCGAUCCGGCgcaguuccuggauACCUGCUg -3'
miRNA:   3'- cCG---UGUGCcGCUAGGUCG-------------UGGACGAg -5'
18543 5' -58 NC_004682.1 + 34186 0.66 0.51913
Target:  5'- aGCGCAUGcCGcg-CAGCGCCUGCUg -3'
miRNA:   3'- cCGUGUGCcGCuagGUCGUGGACGAg -5'
18543 5' -58 NC_004682.1 + 34405 0.66 0.51913
Target:  5'- aGGCGUACGuGUGGUUCAGCAgcgggcguucccUCUGCUg -3'
miRNA:   3'- -CCGUGUGC-CGCUAGGUCGU------------GGACGAg -5'
18543 5' -58 NC_004682.1 + 34628 0.75 0.151177
Target:  5'- uGGCcCACGccgaugcgccgguuGCGAUCCAGCACCUcGCg- -3'
miRNA:   3'- -CCGuGUGC--------------CGCUAGGUCGUGGA-CGag -5'
18543 5' -58 NC_004682.1 + 35744 0.67 0.467911
Target:  5'- cGGCGCGCucaccggggaGGUGAUagcgcucguccaCCAGCGCCagGUUCc -3'
miRNA:   3'- -CCGUGUG----------CCGCUA------------GGUCGUGGa-CGAG- -5'
18543 5' -58 NC_004682.1 + 42638 0.66 0.498353
Target:  5'- cGGCACGCcacaagGGCGGUCCAGUcgUUGgaCu -3'
miRNA:   3'- -CCGUGUG------CCGCUAGGUCGugGACgaG- -5'
18543 5' -58 NC_004682.1 + 43632 0.75 0.140369
Target:  5'- cGGCAUgaACGGCGAgCCAGCG--UGCUCa -3'
miRNA:   3'- -CCGUG--UGCCGCUaGGUCGUggACGAG- -5'
18543 5' -58 NC_004682.1 + 44727 0.67 0.471916
Target:  5'- aGGC-CGCGuaGCGggCCAGCAUCgucuucugccaacgGCUCa -3'
miRNA:   3'- -CCGuGUGC--CGCuaGGUCGUGGa-------------CGAG- -5'
18543 5' -58 NC_004682.1 + 45633 0.77 0.100427
Target:  5'- cGGUugACGGUGGUgCAGUcgGCCUGCUUc -3'
miRNA:   3'- -CCGugUGCCGCUAgGUCG--UGGACGAG- -5'
18543 5' -58 NC_004682.1 + 45823 0.71 0.25842
Target:  5'- uGGCGCACuGGUcgaacgaGAUCCAGUAgcCCUGCg- -3'
miRNA:   3'- -CCGUGUG-CCG-------CUAGGUCGU--GGACGag -5'
18543 5' -58 NC_004682.1 + 46129 1.12 0.00026
Target:  5'- cGGCACACGGCGAUCCAGCACCUGCUCg -3'
miRNA:   3'- -CCGUGUGCCGCUAGGUCGUGGACGAG- -5'
18543 5' -58 NC_004682.1 + 46484 0.72 0.227722
Target:  5'- cGGUG-ACGGCGGUcaCCAGCGCCUuggugagcgGCUCa -3'
miRNA:   3'- -CCGUgUGCCGCUA--GGUCGUGGA---------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.