Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18547 | 3' | -55.9 | NC_004682.1 | + | 44925 | 1.12 | 0.000553 |
Target: 5'- aGCUGCUGGAACGCCCACGACUUCGGGu -3' miRNA: 3'- -CGACGACCUUGCGGGUGCUGAAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 41962 | 0.82 | 0.077635 |
Target: 5'- uCUGCUGGGggaccgugACGCCUACGGCgUCGGGc -3' miRNA: 3'- cGACGACCU--------UGCGGGUGCUGaAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 32120 | 0.74 | 0.264475 |
Target: 5'- cGCUGCUGGAGggcUGCCUucGCGGCcuugUCGGu -3' miRNA: 3'- -CGACGACCUU---GCGGG--UGCUGa---AGCCc -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 13598 | 0.73 | 0.307209 |
Target: 5'- cGCUcCUGGGACGCCgagCACGGCgUUCuGGGc -3' miRNA: 3'- -CGAcGACCUUGCGG---GUGCUG-AAG-CCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 21827 | 0.71 | 0.372091 |
Target: 5'- cGCUGCUGGAgaccagcgagacGgGCCUggGCGACUUCcacuacuacgaGGGu -3' miRNA: 3'- -CGACGACCU------------UgCGGG--UGCUGAAG-----------CCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 38446 | 0.71 | 0.389705 |
Target: 5'- uGCUcCUGGcACGCCCACcg--UCGGGa -3' miRNA: 3'- -CGAcGACCuUGCGGGUGcugaAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 10466 | 0.71 | 0.398714 |
Target: 5'- aGCUGCUGaucGAGCugGCCCAgcgaGGCUUCGcGGu -3' miRNA: 3'- -CGACGAC---CUUG--CGGGUg---CUGAAGC-CC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 24779 | 0.71 | 0.417127 |
Target: 5'- cGCUaucugGUUGGuACGCCUGCGAacUCGGGu -3' miRNA: 3'- -CGA-----CGACCuUGCGGGUGCUgaAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 12670 | 0.7 | 0.445695 |
Target: 5'- --gGCUGGAccgaggGCGUCCACGACUacguccaccaGGGg -3' miRNA: 3'- cgaCGACCU------UGCGGGUGCUGAag--------CCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 29857 | 0.69 | 0.526746 |
Target: 5'- gGUUGUccgGGAGCGUCCACaGACUcguuucgagUCGGa -3' miRNA: 3'- -CGACGa--CCUUGCGGGUG-CUGA---------AGCCc -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 30835 | 0.68 | 0.547905 |
Target: 5'- -aUGCUcgGGAGCGCCUccaggcGCGACUUCa-- -3' miRNA: 3'- cgACGA--CCUUGCGGG------UGCUGAAGccc -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 33875 | 0.67 | 0.590945 |
Target: 5'- uCUGCUcGAACGCUggcauCAgGACUUCGGc -3' miRNA: 3'- cGACGAcCUUGCGG-----GUgCUGAAGCCc -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 17626 | 0.67 | 0.60181 |
Target: 5'- cGCUGCUGG--UGCCCAaccugcaGACgcUCGGc -3' miRNA: 3'- -CGACGACCuuGCGGGUg------CUGa-AGCCc -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 5724 | 0.67 | 0.606164 |
Target: 5'- aGUUGCUGGcACGaCCACaACUgaacauagaaucuauUCGGGa -3' miRNA: 3'- -CGACGACCuUGCgGGUGcUGA---------------AGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 45268 | 0.67 | 0.612701 |
Target: 5'- --gGUUGGcGCGUCCG-GugUUCGGGu -3' miRNA: 3'- cgaCGACCuUGCGGGUgCugAAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 32692 | 0.67 | 0.623609 |
Target: 5'- --gGCaGGAcCGCCCugGccGCUUCGcGGg -3' miRNA: 3'- cgaCGaCCUuGCGGGugC--UGAAGC-CC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 20562 | 0.67 | 0.623609 |
Target: 5'- gGCU-CUGGAACGgCgaCAUGGucCUUCGGGg -3' miRNA: 3'- -CGAcGACCUUGCgG--GUGCU--GAAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 28251 | 0.67 | 0.634524 |
Target: 5'- aGUUGCcgaacgucaGGAA-GCCuCAuCGGCUUCGGGg -3' miRNA: 3'- -CGACGa--------CCUUgCGG-GU-GCUGAAGCCC- -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 41056 | 0.66 | 0.663956 |
Target: 5'- gGCUGUUGGGgucgaugcucuucuGCGUCCAgacgguCGGCUUCGu- -3' miRNA: 3'- -CGACGACCU--------------UGCGGGU------GCUGAAGCcc -5' |
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18547 | 3' | -55.9 | NC_004682.1 | + | 48826 | 0.66 | 0.667216 |
Target: 5'- ---cCUGGAcggguGCGCCguCGGCcUCGGGg -3' miRNA: 3'- cgacGACCU-----UGCGGguGCUGaAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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