miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 24476 0.67 0.475641
Target:  5'- cCAggaGGCCgCuGCGCGCCgACAGGGGa -3'
miRNA:   3'- aGUag-CUGG-GcCGUGCGG-UGUUCCCg -5'
18550 3' -58 NC_004682.1 + 16853 0.67 0.475641
Target:  5'- cCAUCGGCCUgguGGCugGCCuccu-GGCu -3'
miRNA:   3'- aGUAGCUGGG---CCGugCGGuguucCCG- -5'
18550 3' -58 NC_004682.1 + 6496 0.67 0.475641
Target:  5'- -gGUCaACCUGGCGgGCUacucGCAAGGcGCg -3'
miRNA:   3'- agUAGcUGGGCCGUgCGG----UGUUCC-CG- -5'
18550 3' -58 NC_004682.1 + 27526 0.67 0.484653
Target:  5'- gUCAUCGACggCGGCGugauaguCGCUACGGcGGCg -3'
miRNA:   3'- -AGUAGCUGg-GCCGU-------GCGGUGUUcCCG- -5'
18550 3' -58 NC_004682.1 + 9412 0.67 0.48566
Target:  5'- -gGUCGGCCUGcacCACGUCACcGGaGGCu -3'
miRNA:   3'- agUAGCUGGGCc--GUGCGGUGuUC-CCG- -5'
18550 3' -58 NC_004682.1 + 4495 0.67 0.495778
Target:  5'- --cUCGcACCCGGCGgGCUc--GGGGCc -3'
miRNA:   3'- aguAGC-UGGGCCGUgCGGuguUCCCG- -5'
18550 3' -58 NC_004682.1 + 30961 0.67 0.50599
Target:  5'- cUUGUCGACCuuCGGCugGCCGguCucGGuGCg -3'
miRNA:   3'- -AGUAGCUGG--GCCGugCGGU--GuuCC-CG- -5'
18550 3' -58 NC_004682.1 + 14277 0.67 0.505991
Target:  5'- ---cCGACggCGGCAaGCCGCA-GGGCg -3'
miRNA:   3'- aguaGCUGg-GCCGUgCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 48540 0.67 0.505991
Target:  5'- --uUCGGCCCGG-ACGgaCCuuGGGGGCc -3'
miRNA:   3'- aguAGCUGGGCCgUGC--GGugUUCCCG- -5'
18550 3' -58 NC_004682.1 + 33939 0.67 0.515258
Target:  5'- gCGcCGACaCCGGCaccgaacGCGCCgaugaGCGAGGGg -3'
miRNA:   3'- aGUaGCUG-GGCCG-------UGCGG-----UGUUCCCg -5'
18550 3' -58 NC_004682.1 + 48150 0.66 0.526677
Target:  5'- cUCAUgucaGGCCCccaGGCAgaggucgcugcCGCCACAccGGGCg -3'
miRNA:   3'- -AGUAg---CUGGG---CCGU-----------GCGGUGUu-CCCG- -5'
18550 3' -58 NC_004682.1 + 41175 0.66 0.526677
Target:  5'- ---gCGAUCCaGCGCGUCG--AGGGCg -3'
miRNA:   3'- aguaGCUGGGcCGUGCGGUguUCCCG- -5'
18550 3' -58 NC_004682.1 + 40057 0.66 0.526677
Target:  5'- -aGUCGcACCCGGCGUGCCACu---GCu -3'
miRNA:   3'- agUAGC-UGGGCCGUGCGGUGuuccCG- -5'
18550 3' -58 NC_004682.1 + 8768 0.66 0.526677
Target:  5'- aCGUgGACCCGGagaAgGcCCGCGAGGa- -3'
miRNA:   3'- aGUAgCUGGGCCg--UgC-GGUGUUCCcg -5'
18550 3' -58 NC_004682.1 + 13875 0.66 0.526677
Target:  5'- gCAUCGACgcgCUGGCACaagaucuucggGCCggaucaccugACGAGGGUg -3'
miRNA:   3'- aGUAGCUG---GGCCGUG-----------CGG----------UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 46269 0.66 0.537139
Target:  5'- gCA-CGACCUGGgugGCCGCA-GGGCc -3'
miRNA:   3'- aGUaGCUGGGCCgugCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 29039 0.66 0.537139
Target:  5'- -gAUCGGCagCGGCAUGCCgaccGCAcGGaGCg -3'
miRNA:   3'- agUAGCUGg-GCCGUGCGG----UGUuCC-CG- -5'
18550 3' -58 NC_004682.1 + 16677 0.66 0.537139
Target:  5'- cUCGggCGGCagCGGUgauGgGCCugGAGGGCu -3'
miRNA:   3'- -AGUa-GCUGg-GCCG---UgCGGugUUCCCG- -5'
18550 3' -58 NC_004682.1 + 26187 0.66 0.537139
Target:  5'- gCGUaguuCCCGGCACGCCucgACAuccuGGCa -3'
miRNA:   3'- aGUAgcu-GGGCCGUGCGG---UGUuc--CCG- -5'
18550 3' -58 NC_004682.1 + 27391 0.66 0.547672
Target:  5'- cUAUCG--CCGGUACgggugGCCACGGGcGGCa -3'
miRNA:   3'- aGUAGCugGGCCGUG-----CGGUGUUC-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.