miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 43615 0.69 0.381785
Target:  5'- cCAgcUCGauGCCUGGggUGCCGuCAGGGGCg -3'
miRNA:   3'- aGU--AGC--UGGGCCguGCGGU-GUUCCCG- -5'
18550 3' -58 NC_004682.1 + 5370 0.69 0.390606
Target:  5'- aCGcCGACagcgcaUGGCACGUCGCAcacGGGCa -3'
miRNA:   3'- aGUaGCUGg-----GCCGUGCGGUGUu--CCCG- -5'
18550 3' -58 NC_004682.1 + 133 0.69 0.399559
Target:  5'- --cUCGACcgCCGGCACggGCCGgCAcAGGGCc -3'
miRNA:   3'- aguAGCUG--GGCCGUG--CGGU-GU-UCCCG- -5'
18550 3' -58 NC_004682.1 + 31357 0.68 0.417853
Target:  5'- cCAUgaCGACCCGGUGgaucuUGCCcuuGCGGGGGUc -3'
miRNA:   3'- aGUA--GCUGGGCCGU-----GCGG---UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 25003 0.68 0.417853
Target:  5'- aCGcCGACUCGGCGgcaucUGCuCGCAuccAGGGCg -3'
miRNA:   3'- aGUaGCUGGGCCGU-----GCG-GUGU---UCCCG- -5'
18550 3' -58 NC_004682.1 + 15149 0.68 0.417853
Target:  5'- -gAUCcucCCCGGUggACGCCACcuguGGGCa -3'
miRNA:   3'- agUAGcu-GGGCCG--UGCGGUGuu--CCCG- -5'
18550 3' -58 NC_004682.1 + 41889 0.68 0.427189
Target:  5'- cUCAagcuCCUGGCGCGCUGCGAuGGCg -3'
miRNA:   3'- -AGUagcuGGGCCGUGCGGUGUUcCCG- -5'
18550 3' -58 NC_004682.1 + 12252 0.68 0.433797
Target:  5'- -aGUCGACCuacaccgagcagguCGGCGCGauCCGUGAGGGCc -3'
miRNA:   3'- agUAGCUGG--------------GCCGUGC--GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 22000 0.68 0.436648
Target:  5'- aCGUCGgugaACCCGGCuACGgCCACuucuGGCu -3'
miRNA:   3'- aGUAGC----UGGGCCG-UGC-GGUGuuc-CCG- -5'
18550 3' -58 NC_004682.1 + 21394 0.68 0.436648
Target:  5'- gCAUCGGa-CGGCAUGaC-CGAGGGCa -3'
miRNA:   3'- aGUAGCUggGCCGUGCgGuGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 33598 0.68 0.436648
Target:  5'- gCGUCGgaGCCCGaGCugGCCA---GGGUc -3'
miRNA:   3'- aGUAGC--UGGGC-CGugCGGUguuCCCG- -5'
18550 3' -58 NC_004682.1 + 2031 0.68 0.440465
Target:  5'- gUCAUCGccggcaACCCGG-ACGUgcaguucugggcauaCACAAGGGUu -3'
miRNA:   3'- -AGUAGC------UGGGCCgUGCG---------------GUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 7844 0.68 0.454945
Target:  5'- -gGUCGACaCCGGCAUGCUcuACGacgcccuGGaGGCc -3'
miRNA:   3'- agUAGCUG-GGCCGUGCGG--UGU-------UC-CCG- -5'
18550 3' -58 NC_004682.1 + 50189 0.68 0.45592
Target:  5'- -gGUCGACCuCGGU-CGCCugGGuGaGGCa -3'
miRNA:   3'- agUAGCUGG-GCCGuGCGGugUU-C-CCG- -5'
18550 3' -58 NC_004682.1 + 25632 0.67 0.465726
Target:  5'- cCGUCGAaguagcgcuguCCgGGCGCuCCACuGGGGUc -3'
miRNA:   3'- aGUAGCU-----------GGgCCGUGcGGUGuUCCCG- -5'
18550 3' -58 NC_004682.1 + 13299 0.67 0.465726
Target:  5'- ---cCGACgCCGGCcCGgUggaGCAAGGGCa -3'
miRNA:   3'- aguaGCUG-GGCCGuGCgG---UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 11357 0.67 0.465726
Target:  5'- aCAUccCGGCCCacGGUGCGCUACAcaccaccGGGCc -3'
miRNA:   3'- aGUA--GCUGGG--CCGUGCGGUGUu------CCCG- -5'
18550 3' -58 NC_004682.1 + 11542 0.67 0.469679
Target:  5'- gCGUCGACCacgaccacgaaacaGGCAuCGUCA-GGGGGCu -3'
miRNA:   3'- aGUAGCUGGg-------------CCGU-GCGGUgUUCCCG- -5'
18550 3' -58 NC_004682.1 + 42160 0.67 0.469679
Target:  5'- aUCGcUCGGCCCcGCGagGCCGCGuccugcuccucggugAGGGCc -3'
miRNA:   3'- -AGU-AGCUGGGcCGUg-CGGUGU---------------UCCCG- -5'
18550 3' -58 NC_004682.1 + 42853 0.67 0.475641
Target:  5'- cUCGUCGA-CCGGCA-GCCAguAcgagucgccucGGGCg -3'
miRNA:   3'- -AGUAGCUgGGCCGUgCGGUguU-----------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.