miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 10230 0.66 0.547672
Target:  5'- gCGUCGGCaCgCGGCACuGCaugGCucGGGCc -3'
miRNA:   3'- aGUAGCUG-G-GCCGUG-CGg--UGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 11031 0.71 0.308549
Target:  5'- gCAUCGGgC-GGCGCGCUAuacgcgguCGAGGGCu -3'
miRNA:   3'- aGUAGCUgGgCCGUGCGGU--------GUUCCCG- -5'
18550 3' -58 NC_004682.1 + 11357 0.67 0.465726
Target:  5'- aCAUccCGGCCCacGGUGCGCUACAcaccaccGGGCc -3'
miRNA:   3'- aGUA--GCUGGG--CCGUGCGGUGUu------CCCG- -5'
18550 3' -58 NC_004682.1 + 11542 0.67 0.469679
Target:  5'- gCGUCGACCacgaccacgaaacaGGCAuCGUCA-GGGGGCu -3'
miRNA:   3'- aGUAGCUGGg-------------CCGU-GCGGUgUUCCCG- -5'
18550 3' -58 NC_004682.1 + 12252 0.68 0.433797
Target:  5'- -aGUCGACCuacaccgagcagguCGGCGCGauCCGUGAGGGCc -3'
miRNA:   3'- agUAGCUGG--------------GCCGUGC--GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 13299 0.67 0.465726
Target:  5'- ---cCGACgCCGGCcCGgUggaGCAAGGGCa -3'
miRNA:   3'- aguaGCUG-GGCCGuGCgG---UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 13875 0.66 0.526677
Target:  5'- gCAUCGACgcgCUGGCACaagaucuucggGCCggaucaccugACGAGGGUg -3'
miRNA:   3'- aGUAGCUG---GGCCGUG-----------CGG----------UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 14277 0.67 0.505991
Target:  5'- ---cCGACggCGGCAaGCCGCA-GGGCg -3'
miRNA:   3'- aguaGCUGg-GCCGUgCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 15149 0.68 0.417853
Target:  5'- -gAUCcucCCCGGUggACGCCACcuguGGGCa -3'
miRNA:   3'- agUAGcu-GGGCCG--UGCGGUGuu--CCCG- -5'
18550 3' -58 NC_004682.1 + 16677 0.66 0.537139
Target:  5'- cUCGggCGGCagCGGUgauGgGCCugGAGGGCu -3'
miRNA:   3'- -AGUa-GCUGg-GCCG---UgCGGugUUCCCG- -5'
18550 3' -58 NC_004682.1 + 16853 0.67 0.475641
Target:  5'- cCAUCGGCCUgguGGCugGCCuccu-GGCu -3'
miRNA:   3'- aGUAGCUGGG---CCGugCGGuguucCCG- -5'
18550 3' -58 NC_004682.1 + 18258 0.75 0.157679
Target:  5'- gUAUCGACCUGGCugucggUGCCGCGcagAGGGUc -3'
miRNA:   3'- aGUAGCUGGGCCGu-----GCGGUGU---UCCCG- -5'
18550 3' -58 NC_004682.1 + 19650 0.72 0.265975
Target:  5'- -gGUCGACCCGG-AgGaCgGCAAGGGUg -3'
miRNA:   3'- agUAGCUGGGCCgUgC-GgUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 21394 0.68 0.436648
Target:  5'- gCAUCGGa-CGGCAUGaC-CGAGGGCa -3'
miRNA:   3'- aGUAGCUggGCCGUGCgGuGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 22000 0.68 0.436648
Target:  5'- aCGUCGgugaACCCGGCuACGgCCACuucuGGCu -3'
miRNA:   3'- aGUAGC----UGGGCCG-UGC-GGUGuuc-CCG- -5'
18550 3' -58 NC_004682.1 + 22132 0.69 0.373098
Target:  5'- aUCuUCGuCCCGccGC-CGCCGCGAguGGGCg -3'
miRNA:   3'- -AGuAGCuGGGC--CGuGCGGUGUU--CCCG- -5'
18550 3' -58 NC_004682.1 + 22886 0.72 0.246532
Target:  5'- gUCGUCGGCCUGGUG-GCCuuCAuccuGGGCa -3'
miRNA:   3'- -AGUAGCUGGGCCGUgCGGu-GUu---CCCG- -5'
18550 3' -58 NC_004682.1 + 23916 0.71 0.293804
Target:  5'- cCGagGACgCGGC-UGCCGCGAuGGGCa -3'
miRNA:   3'- aGUagCUGgGCCGuGCGGUGUU-CCCG- -5'
18550 3' -58 NC_004682.1 + 24476 0.67 0.475641
Target:  5'- cCAggaGGCCgCuGCGCGCCgACAGGGGa -3'
miRNA:   3'- aGUag-CUGG-GcCGUGCGG-UGUUCCCg -5'
18550 3' -58 NC_004682.1 + 24617 0.78 0.10446
Target:  5'- ---cCGACCCGGCgaACGCCAC--GGGCu -3'
miRNA:   3'- aguaGCUGGGCCG--UGCGGUGuuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.