miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 133 0.69 0.399559
Target:  5'- --cUCGACcgCCGGCACggGCCGgCAcAGGGCc -3'
miRNA:   3'- aguAGCUG--GGCCGUG--CGGU-GU-UCCCG- -5'
18550 3' -58 NC_004682.1 + 1722 0.66 0.558269
Target:  5'- -aGUCGGCUcuguccuacguCGGCACGCCGacc-GGCa -3'
miRNA:   3'- agUAGCUGG-----------GCCGUGCGGUguucCCG- -5'
18550 3' -58 NC_004682.1 + 2031 0.68 0.440465
Target:  5'- gUCAUCGccggcaACCCGG-ACGUgcaguucugggcauaCACAAGGGUu -3'
miRNA:   3'- -AGUAGC------UGGGCCgUGCG---------------GUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 2231 0.69 0.364546
Target:  5'- cCAcCGGCCCaGCAgGucccaccggcCCGCAAGGGCc -3'
miRNA:   3'- aGUaGCUGGGcCGUgC----------GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 2905 0.75 0.15306
Target:  5'- aUCAUCGugUugggcagCGGCGCguGCgGCAAGGGCa -3'
miRNA:   3'- -AGUAGCugG-------GCCGUG--CGgUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 3223 0.71 0.28664
Target:  5'- aCGUCGGC--GGCGCGgCACA-GGGCg -3'
miRNA:   3'- aGUAGCUGggCCGUGCgGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 4495 0.67 0.495778
Target:  5'- --cUCGcACCCGGCGgGCUc--GGGGCc -3'
miRNA:   3'- aguAGC-UGGGCCGUgCGGuguUCCCG- -5'
18550 3' -58 NC_004682.1 + 4891 0.66 0.579628
Target:  5'- ----gGGCUCGGUgagcccGCGCUACucGGGCg -3'
miRNA:   3'- aguagCUGGGCCG------UGCGGUGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 5022 0.71 0.307798
Target:  5'- cUCGuUCGACCa-GUGCGCCACGcugaucccgccgaAGGGCu -3'
miRNA:   3'- -AGU-AGCUGGgcCGUGCGGUGU-------------UCCCG- -5'
18550 3' -58 NC_004682.1 + 5257 0.66 0.558269
Target:  5'- -gAUCGccGCCauGCuCGCCGCGcuGGGGCu -3'
miRNA:   3'- agUAGC--UGGgcCGuGCGGUGU--UCCCG- -5'
18550 3' -58 NC_004682.1 + 5370 0.69 0.390606
Target:  5'- aCGcCGACagcgcaUGGCACGUCGCAcacGGGCa -3'
miRNA:   3'- aGUaGCUGg-----GCCGUGCGGUGUu--CCCG- -5'
18550 3' -58 NC_004682.1 + 6496 0.67 0.475641
Target:  5'- -gGUCaACCUGGCGgGCUacucGCAAGGcGCg -3'
miRNA:   3'- agUAGcUGGGCCGUgCGG----UGUUCC-CG- -5'
18550 3' -58 NC_004682.1 + 7271 0.66 0.558269
Target:  5'- -gGUCGAUgacaaCGGCAacuacgucuaCCGCGAGGGCa -3'
miRNA:   3'- agUAGCUGg----GCCGUgc--------GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 7844 0.68 0.454945
Target:  5'- -gGUCGACaCCGGCAUGCUcuACGacgcccuGGaGGCc -3'
miRNA:   3'- agUAGCUG-GGCCGUGCGG--UGU-------UC-CCG- -5'
18550 3' -58 NC_004682.1 + 7927 0.71 0.279614
Target:  5'- uUCAUCGGggggCCGGCGgGCCAUGAGcaguGGCg -3'
miRNA:   3'- -AGUAGCUg---GGCCGUgCGGUGUUC----CCG- -5'
18550 3' -58 NC_004682.1 + 8768 0.66 0.526677
Target:  5'- aCGUgGACCCGGagaAgGcCCGCGAGGa- -3'
miRNA:   3'- aGUAgCUGGGCCg--UgC-GGUGUUCCcg -5'
18550 3' -58 NC_004682.1 + 8942 0.71 0.272726
Target:  5'- aCAUCGACgCCaucgcaGCGCGCCAggagcuUGAGGGCu -3'
miRNA:   3'- aGUAGCUG-GGc-----CGUGCGGU------GUUCCCG- -5'
18550 3' -58 NC_004682.1 + 9194 0.66 0.579628
Target:  5'- -gAUCGACCCGcGCAC-CCgACAGGugauGCg -3'
miRNA:   3'- agUAGCUGGGC-CGUGcGG-UGUUCc---CG- -5'
18550 3' -58 NC_004682.1 + 9412 0.67 0.48566
Target:  5'- -gGUCGGCCUGcacCACGUCACcGGaGGCu -3'
miRNA:   3'- agUAGCUGGGCc--GUGCGGUGuUC-CCG- -5'
18550 3' -58 NC_004682.1 + 9921 0.7 0.316131
Target:  5'- cCGUCGACgCCGacGUACGCCGCcaaGGCa -3'
miRNA:   3'- aGUAGCUG-GGC--CGUGCGGUGuucCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.