miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 50189 0.68 0.45592
Target:  5'- -gGUCGACCuCGGU-CGCCugGGuGaGGCa -3'
miRNA:   3'- agUAGCUGG-GCCGuGCGGugUU-C-CCG- -5'
18550 3' -58 NC_004682.1 + 48540 0.67 0.505991
Target:  5'- --uUCGGCCCGG-ACGgaCCuuGGGGGCc -3'
miRNA:   3'- aguAGCUGGGCCgUGC--GGugUUCCCG- -5'
18550 3' -58 NC_004682.1 + 48150 0.66 0.526677
Target:  5'- cUCAUgucaGGCCCccaGGCAgaggucgcugcCGCCACAccGGGCg -3'
miRNA:   3'- -AGUAg---CUGGG---CCGU-----------GCGGUGUu-CCCG- -5'
18550 3' -58 NC_004682.1 + 46269 0.66 0.537139
Target:  5'- gCA-CGACCUGGgugGCCGCA-GGGCc -3'
miRNA:   3'- aGUaGCUGGGCCgugCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 45731 0.76 0.133944
Target:  5'- -gAUCGGCgCGGCGuCGaCCACGGGGGUc -3'
miRNA:   3'- agUAGCUGgGCCGU-GC-GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 44788 0.73 0.216761
Target:  5'- gUCGuUCGACCCG--AC-CCGCAGGGGCa -3'
miRNA:   3'- -AGU-AGCUGGGCcgUGcGGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 43615 0.69 0.381785
Target:  5'- cCAgcUCGauGCCUGGggUGCCGuCAGGGGCg -3'
miRNA:   3'- aGU--AGC--UGGGCCguGCGGU-GUUCCCG- -5'
18550 3' -58 NC_004682.1 + 42853 0.67 0.475641
Target:  5'- cUCGUCGA-CCGGCA-GCCAguAcgagucgccucGGGCg -3'
miRNA:   3'- -AGUAGCUgGGCCGUgCGGUguU-----------CCCG- -5'
18550 3' -58 NC_004682.1 + 42628 1.12 0.000297
Target:  5'- gUCAUCGACCCGGCACGCCACAAGGGCg -3'
miRNA:   3'- -AGUAGCUGGGCCGUGCGGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 42160 0.67 0.469679
Target:  5'- aUCGcUCGGCCCcGCGagGCCGCGuccugcuccucggugAGGGCc -3'
miRNA:   3'- -AGU-AGCUGGGcCGUg-CGGUGU---------------UCCCG- -5'
18550 3' -58 NC_004682.1 + 41889 0.68 0.427189
Target:  5'- cUCAagcuCCUGGCGCGCUGCGAuGGCg -3'
miRNA:   3'- -AGUagcuGGGCCGUGCGGUGUUcCCG- -5'
18550 3' -58 NC_004682.1 + 41329 0.66 0.578556
Target:  5'- cUCugaGACCCGGUgcaGCGUCAgGAucaucucGGGCa -3'
miRNA:   3'- -AGuagCUGGGCCG---UGCGGUgUU-------CCCG- -5'
18550 3' -58 NC_004682.1 + 41175 0.66 0.526677
Target:  5'- ---gCGAUCCaGCGCGUCG--AGGGCg -3'
miRNA:   3'- aguaGCUGGGcCGUGCGGUguUCCCG- -5'
18550 3' -58 NC_004682.1 + 40057 0.66 0.526677
Target:  5'- -aGUCGcACCCGGCGUGCCACu---GCu -3'
miRNA:   3'- agUAGC-UGGGCCGUGCGGUGuuccCG- -5'
18550 3' -58 NC_004682.1 + 35843 0.73 0.216761
Target:  5'- gCGUCGuCCCGGCgcaccgACGCCuuguGGGCg -3'
miRNA:   3'- aGUAGCuGGGCCG------UGCGGuguuCCCG- -5'
18550 3' -58 NC_004682.1 + 35726 0.66 0.568924
Target:  5'- cCAUCaGCCggaucagauCGGCGCGCuCACcGGGGa -3'
miRNA:   3'- aGUAGcUGG---------GCCGUGCG-GUGuUCCCg -5'
18550 3' -58 NC_004682.1 + 34274 0.76 0.14537
Target:  5'- cCAUCGAgCCUGGUugGCCGucAGGGUc -3'
miRNA:   3'- aGUAGCU-GGGCCGugCGGUguUCCCG- -5'
18550 3' -58 NC_004682.1 + 33939 0.67 0.515258
Target:  5'- gCGcCGACaCCGGCaccgaacGCGCCgaugaGCGAGGGg -3'
miRNA:   3'- aGUaGCUG-GGCCG-------UGCGG-----UGUUCCCg -5'
18550 3' -58 NC_004682.1 + 33784 0.7 0.356131
Target:  5'- uUCGggGGCCuCGGCGggaGCCGCcuGGGCc -3'
miRNA:   3'- -AGUagCUGG-GCCGUg--CGGUGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 33598 0.68 0.436648
Target:  5'- gCGUCGgaGCCCGaGCugGCCA---GGGUc -3'
miRNA:   3'- aGUAGC--UGGGC-CGugCGGUguuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.