miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 42160 0.67 0.469679
Target:  5'- aUCGcUCGGCCCcGCGagGCCGCGuccugcuccucggugAGGGCc -3'
miRNA:   3'- -AGU-AGCUGGGcCGUg-CGGUGU---------------UCCCG- -5'
18550 3' -58 NC_004682.1 + 43615 0.69 0.381785
Target:  5'- cCAgcUCGauGCCUGGggUGCCGuCAGGGGCg -3'
miRNA:   3'- aGU--AGC--UGGGCCguGCGGU-GUUCCCG- -5'
18550 3' -58 NC_004682.1 + 133 0.69 0.399559
Target:  5'- --cUCGACcgCCGGCACggGCCGgCAcAGGGCc -3'
miRNA:   3'- aguAGCUG--GGCCGUG--CGGU-GU-UCCCG- -5'
18550 3' -58 NC_004682.1 + 25003 0.68 0.417853
Target:  5'- aCGcCGACUCGGCGgcaucUGCuCGCAuccAGGGCg -3'
miRNA:   3'- aGUaGCUGGGCCGU-----GCG-GUGU---UCCCG- -5'
18550 3' -58 NC_004682.1 + 12252 0.68 0.433797
Target:  5'- -aGUCGACCuacaccgagcagguCGGCGCGauCCGUGAGGGCc -3'
miRNA:   3'- agUAGCUGG--------------GCCGUGC--GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 21394 0.68 0.436648
Target:  5'- gCAUCGGa-CGGCAUGaC-CGAGGGCa -3'
miRNA:   3'- aGUAGCUggGCCGUGCgGuGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 22000 0.68 0.436648
Target:  5'- aCGUCGgugaACCCGGCuACGgCCACuucuGGCu -3'
miRNA:   3'- aGUAGC----UGGGCCG-UGC-GGUGuuc-CCG- -5'
18550 3' -58 NC_004682.1 + 7844 0.68 0.454945
Target:  5'- -gGUCGACaCCGGCAUGCUcuACGacgcccuGGaGGCc -3'
miRNA:   3'- agUAGCUG-GGCCGUGCGG--UGU-------UC-CCG- -5'
18550 3' -58 NC_004682.1 + 25632 0.67 0.465726
Target:  5'- cCGUCGAaguagcgcuguCCgGGCGCuCCACuGGGGUc -3'
miRNA:   3'- aGUAGCU-----------GGgCCGUGcGGUGuUCCCG- -5'
18550 3' -58 NC_004682.1 + 2231 0.69 0.364546
Target:  5'- cCAcCGGCCCaGCAgGucccaccggcCCGCAAGGGCc -3'
miRNA:   3'- aGUaGCUGGGcCGUgC----------GGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 33784 0.7 0.356131
Target:  5'- uUCGggGGCCuCGGCGggaGCCGCcuGGGCc -3'
miRNA:   3'- -AGUagCUGG-GCCGUg--CGGUGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 9921 0.7 0.316131
Target:  5'- cCGUCGACgCCGacGUACGCCGCcaaGGCa -3'
miRNA:   3'- aGUAGCUG-GGC--CGUGCGGUGuucCCG- -5'
18550 3' -58 NC_004682.1 + 2905 0.75 0.15306
Target:  5'- aUCAUCGugUugggcagCGGCGCguGCgGCAAGGGCa -3'
miRNA:   3'- -AGUAGCugG-------GCCGUG--CGgUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 18258 0.75 0.157679
Target:  5'- gUAUCGACCUGGCugucggUGCCGCGcagAGGGUc -3'
miRNA:   3'- aGUAGCUGGGCCGu-----GCGGUGU---UCCCG- -5'
18550 3' -58 NC_004682.1 + 22886 0.72 0.246532
Target:  5'- gUCGUCGGCCUGGUG-GCCuuCAuccuGGGCa -3'
miRNA:   3'- -AGUAGCUGGGCCGUgCGGu-GUu---CCCG- -5'
18550 3' -58 NC_004682.1 + 19650 0.72 0.265975
Target:  5'- -gGUCGACCCGG-AgGaCgGCAAGGGUg -3'
miRNA:   3'- agUAGCUGGGCCgUgC-GgUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 8942 0.71 0.272726
Target:  5'- aCAUCGACgCCaucgcaGCGCGCCAggagcuUGAGGGCu -3'
miRNA:   3'- aGUAGCUG-GGc-----CGUGCGGU------GUUCCCG- -5'
18550 3' -58 NC_004682.1 + 3223 0.71 0.28664
Target:  5'- aCGUCGGC--GGCGCGgCACA-GGGCg -3'
miRNA:   3'- aGUAGCUGggCCGUGCgGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 23916 0.71 0.293804
Target:  5'- cCGagGACgCGGC-UGCCGCGAuGGGCa -3'
miRNA:   3'- aGUagCUGgGCCGuGCGGUGUU-CCCG- -5'
18550 3' -58 NC_004682.1 + 5022 0.71 0.307798
Target:  5'- cUCGuUCGACCa-GUGCGCCACGcugaucccgccgaAGGGCu -3'
miRNA:   3'- -AGU-AGCUGGgcCGUGCGGUGU-------------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.