miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18550 3' -58 NC_004682.1 + 5257 0.66 0.558269
Target:  5'- -gAUCGccGCCauGCuCGCCGCGcuGGGGCu -3'
miRNA:   3'- agUAGC--UGGgcCGuGCGGUGU--UCCCG- -5'
18550 3' -58 NC_004682.1 + 11357 0.67 0.465726
Target:  5'- aCAUccCGGCCCacGGUGCGCUACAcaccaccGGGCc -3'
miRNA:   3'- aGUA--GCUGGG--CCGUGCGGUGUu------CCCG- -5'
18550 3' -58 NC_004682.1 + 2031 0.68 0.440465
Target:  5'- gUCAUCGccggcaACCCGG-ACGUgcaguucugggcauaCACAAGGGUu -3'
miRNA:   3'- -AGUAGC------UGGGCCgUGCG---------------GUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 42628 1.12 0.000297
Target:  5'- gUCAUCGACCCGGCACGCCACAAGGGCg -3'
miRNA:   3'- -AGUAGCUGGGCCGUGCGGUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 26187 0.66 0.537139
Target:  5'- gCGUaguuCCCGGCACGCCucgACAuccuGGCa -3'
miRNA:   3'- aGUAgcu-GGGCCGUGCGG---UGUuc--CCG- -5'
18550 3' -58 NC_004682.1 + 46269 0.66 0.537139
Target:  5'- gCA-CGACCUGGgugGCCGCA-GGGCc -3'
miRNA:   3'- aGUaGCUGGGCCgugCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 40057 0.66 0.526677
Target:  5'- -aGUCGcACCCGGCGUGCCACu---GCu -3'
miRNA:   3'- agUAGC-UGGGCCGUGCGGUGuuccCG- -5'
18550 3' -58 NC_004682.1 + 33939 0.67 0.515258
Target:  5'- gCGcCGACaCCGGCaccgaacGCGCCgaugaGCGAGGGg -3'
miRNA:   3'- aGUaGCUG-GGCCG-------UGCGG-----UGUUCCCg -5'
18550 3' -58 NC_004682.1 + 4495 0.67 0.495778
Target:  5'- --cUCGcACCCGGCGgGCUc--GGGGCc -3'
miRNA:   3'- aguAGC-UGGGCCGUgCGGuguUCCCG- -5'
18550 3' -58 NC_004682.1 + 13299 0.67 0.465726
Target:  5'- ---cCGACgCCGGCcCGgUggaGCAAGGGCa -3'
miRNA:   3'- aguaGCUG-GGCCGuGCgG---UGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 42853 0.67 0.475641
Target:  5'- cUCGUCGA-CCGGCA-GCCAguAcgagucgccucGGGCg -3'
miRNA:   3'- -AGUAGCUgGGCCGUgCGGUguU-----------CCCG- -5'
18550 3' -58 NC_004682.1 + 14277 0.67 0.505991
Target:  5'- ---cCGACggCGGCAaGCCGCA-GGGCg -3'
miRNA:   3'- aguaGCUGg-GCCGUgCGGUGUuCCCG- -5'
18550 3' -58 NC_004682.1 + 33035 0.66 0.547672
Target:  5'- cCAUCuGACCCaucGCG-GUgGCGAGGGCc -3'
miRNA:   3'- aGUAG-CUGGGc--CGUgCGgUGUUCCCG- -5'
18550 3' -58 NC_004682.1 + 24476 0.67 0.475641
Target:  5'- cCAggaGGCCgCuGCGCGCCgACAGGGGa -3'
miRNA:   3'- aGUag-CUGG-GcCGUGCGG-UGUUCCCg -5'
18550 3' -58 NC_004682.1 + 10230 0.66 0.547672
Target:  5'- gCGUCGGCaCgCGGCACuGCaugGCucGGGCc -3'
miRNA:   3'- aGUAGCUG-G-GCCGUG-CGg--UGuuCCCG- -5'
18550 3' -58 NC_004682.1 + 48540 0.67 0.505991
Target:  5'- --uUCGGCCCGG-ACGgaCCuuGGGGGCc -3'
miRNA:   3'- aguAGCUGGGCCgUGC--GGugUUCCCG- -5'
18550 3' -58 NC_004682.1 + 11542 0.67 0.469679
Target:  5'- gCGUCGACCacgaccacgaaacaGGCAuCGUCA-GGGGGCu -3'
miRNA:   3'- aGUAGCUGGg-------------CCGU-GCGGUgUUCCCG- -5'
18550 3' -58 NC_004682.1 + 50189 0.68 0.45592
Target:  5'- -gGUCGACCuCGGU-CGCCugGGuGaGGCa -3'
miRNA:   3'- agUAGCUGG-GCCGuGCGGugUU-C-CCG- -5'
18550 3' -58 NC_004682.1 + 29039 0.66 0.537139
Target:  5'- -gAUCGGCagCGGCAUGCCgaccGCAcGGaGCg -3'
miRNA:   3'- agUAGCUGg-GCCGUGCGG----UGUuCC-CG- -5'
18550 3' -58 NC_004682.1 + 41175 0.66 0.526677
Target:  5'- ---gCGAUCCaGCGCGUCG--AGGGCg -3'
miRNA:   3'- aguaGCUGGGcCGUGCGGUguUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.