Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18550 | 3' | -58 | NC_004682.1 | + | 25003 | 0.68 | 0.417853 |
Target: 5'- aCGcCGACUCGGCGgcaucUGCuCGCAuccAGGGCg -3' miRNA: 3'- aGUaGCUGGGCCGU-----GCG-GUGU---UCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 25632 | 0.67 | 0.465726 |
Target: 5'- cCGUCGAaguagcgcuguCCgGGCGCuCCACuGGGGUc -3' miRNA: 3'- aGUAGCU-----------GGgCCGUGcGGUGuUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 26187 | 0.66 | 0.537139 |
Target: 5'- gCGUaguuCCCGGCACGCCucgACAuccuGGCa -3' miRNA: 3'- aGUAgcu-GGGCCGUGCGG---UGUuc--CCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 27391 | 0.66 | 0.547672 |
Target: 5'- cUAUCG--CCGGUACgggugGCCACGGGcGGCa -3' miRNA: 3'- aGUAGCugGGCCGUG-----CGGUGUUC-CCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 27526 | 0.67 | 0.484653 |
Target: 5'- gUCAUCGACggCGGCGugauaguCGCUACGGcGGCg -3' miRNA: 3'- -AGUAGCUGg-GCCGU-------GCGGUGUUcCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 29039 | 0.66 | 0.537139 |
Target: 5'- -gAUCGGCagCGGCAUGCCgaccGCAcGGaGCg -3' miRNA: 3'- agUAGCUGg-GCCGUGCGG----UGUuCC-CG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 30961 | 0.67 | 0.50599 |
Target: 5'- cUUGUCGACCuuCGGCugGCCGguCucGGuGCg -3' miRNA: 3'- -AGUAGCUGG--GCCGugCGGU--GuuCC-CG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 31357 | 0.68 | 0.417853 |
Target: 5'- cCAUgaCGACCCGGUGgaucuUGCCcuuGCGGGGGUc -3' miRNA: 3'- aGUA--GCUGGGCCGU-----GCGG---UGUUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 33035 | 0.66 | 0.547672 |
Target: 5'- cCAUCuGACCCaucGCG-GUgGCGAGGGCc -3' miRNA: 3'- aGUAG-CUGGGc--CGUgCGgUGUUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 33598 | 0.68 | 0.436648 |
Target: 5'- gCGUCGgaGCCCGaGCugGCCA---GGGUc -3' miRNA: 3'- aGUAGC--UGGGC-CGugCGGUguuCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 33784 | 0.7 | 0.356131 |
Target: 5'- uUCGggGGCCuCGGCGggaGCCGCcuGGGCc -3' miRNA: 3'- -AGUagCUGG-GCCGUg--CGGUGuuCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 33939 | 0.67 | 0.515258 |
Target: 5'- gCGcCGACaCCGGCaccgaacGCGCCgaugaGCGAGGGg -3' miRNA: 3'- aGUaGCUG-GGCCG-------UGCGG-----UGUUCCCg -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 34274 | 0.76 | 0.14537 |
Target: 5'- cCAUCGAgCCUGGUugGCCGucAGGGUc -3' miRNA: 3'- aGUAGCU-GGGCCGugCGGUguUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 35726 | 0.66 | 0.568924 |
Target: 5'- cCAUCaGCCggaucagauCGGCGCGCuCACcGGGGa -3' miRNA: 3'- aGUAGcUGG---------GCCGUGCG-GUGuUCCCg -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 35843 | 0.73 | 0.216761 |
Target: 5'- gCGUCGuCCCGGCgcaccgACGCCuuguGGGCg -3' miRNA: 3'- aGUAGCuGGGCCG------UGCGGuguuCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 40057 | 0.66 | 0.526677 |
Target: 5'- -aGUCGcACCCGGCGUGCCACu---GCu -3' miRNA: 3'- agUAGC-UGGGCCGUGCGGUGuuccCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 41175 | 0.66 | 0.526677 |
Target: 5'- ---gCGAUCCaGCGCGUCG--AGGGCg -3' miRNA: 3'- aguaGCUGGGcCGUGCGGUguUCCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 41329 | 0.66 | 0.578556 |
Target: 5'- cUCugaGACCCGGUgcaGCGUCAgGAucaucucGGGCa -3' miRNA: 3'- -AGuagCUGGGCCG---UGCGGUgUU-------CCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 41889 | 0.68 | 0.427189 |
Target: 5'- cUCAagcuCCUGGCGCGCUGCGAuGGCg -3' miRNA: 3'- -AGUagcuGGGCCGUGCGGUGUUcCCG- -5' |
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18550 | 3' | -58 | NC_004682.1 | + | 42160 | 0.67 | 0.469679 |
Target: 5'- aUCGcUCGGCCCcGCGagGCCGCGuccugcuccucggugAGGGCc -3' miRNA: 3'- -AGU-AGCUGGGcCGUg-CGGUGU---------------UCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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