Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 26270 | 0.66 | 0.838273 |
|
Target: 5'- cGCGUUCGCGggGa--CGuuGUUgCCGCc -3' miRNA: 3'- -CGCAGGUGCuuCaagGCuuCGA-GGCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 43458 | 0.66 | 0.829266 |
|
Target: 5'- uGCGUCgaaguGCGAgaaggcuacGGggCCGcaGAGUUCCGCg -3' miRNA: 3'- -CGCAGg----UGCU---------UCaaGGC--UUCGAGGCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 3393 | 0.67 | 0.801016 |
|
Target: 5'- uCGUaCACGccGacaCCGAGGCUCCGUu -3' miRNA: 3'- cGCAgGUGCuuCaa-GGCUUCGAGGCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 10364 | 0.67 | 0.781264 |
|
Target: 5'- uCGUCCuCGAugacgGGUUCCGAgucgGGgUCuCGCa -3' miRNA: 3'- cGCAGGuGCU-----UCAAGGCU----UCgAG-GCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 1929 | 0.68 | 0.729332 |
|
Target: 5'- gGCGUUCgucaaggacuGCGAcaagcgcaaGGcUCCGAAGCuguUCCGCa -3' miRNA: 3'- -CGCAGG----------UGCU---------UCaAGGCUUCG---AGGCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 27391 | 0.69 | 0.690322 |
|
Target: 5'- gGCGUCCuCGGugaaguccuggccguAGUUCC-AGGCcCCGCc -3' miRNA: 3'- -CGCAGGuGCU---------------UCAAGGcUUCGaGGCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 12682 | 0.69 | 0.668296 |
|
Target: 5'- gGCGUCCACGAcuacgUCCaccagggggacgaguGAAcgaggacaacguGCUCCGCg -3' miRNA: 3'- -CGCAGGUGCUuca--AGG---------------CUU------------CGAGGCG- -5' |
|||||||
| 18554 | 3' | -53 | NC_004682.1 | + | 10870 | 0.66 | 0.84706 |
|
Target: 5'- uCGUUCGCcGGGUUCCGGuucguccgugcGGCUUaCGCg -3' miRNA: 3'- cGCAGGUGcUUCAAGGCU-----------UCGAG-GCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home