miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18554 3' -53 NC_004682.1 + 26448 0.69 0.685932
Target:  5'- aGCGUCCAgcacCGucGUgCCGAucuuGCUcCCGCc -3'
miRNA:   3'- -CGCAGGU----GCuuCAaGGCUu---CGA-GGCG- -5'
18554 3' -53 NC_004682.1 + 29260 0.68 0.71212
Target:  5'- gGCGgCgAUGAAGUcggcaucggccucgcUCUGGAGgUCCGCa -3'
miRNA:   3'- -CGCaGgUGCUUCA---------------AGGCUUCgAGGCG- -5'
18554 3' -53 NC_004682.1 + 27391 0.69 0.690322
Target:  5'- gGCGUCCuCGGugaaguccuggccguAGUUCC-AGGCcCCGCc -3'
miRNA:   3'- -CGCAGGuGCU---------------UCAAGGcUUCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 12682 0.69 0.668296
Target:  5'- gGCGUCCACGAcuacgUCCaccagggggacgaguGAAcgaggacaacguGCUCCGCg -3'
miRNA:   3'- -CGCAGGUGCUuca--AGG---------------CUU------------CGAGGCG- -5'
18554 3' -53 NC_004682.1 + 9158 0.69 0.663871
Target:  5'- gGCGaCCugGggGacgCUGAggacgAGUUCCGCg -3'
miRNA:   3'- -CGCaGGugCuuCaa-GGCU-----UCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 23057 0.69 0.65279
Target:  5'- uGCGUUCGCGAuGUgcaGuGGUUCCGCu -3'
miRNA:   3'- -CGCAGGUGCUuCAaggCuUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 8055 0.7 0.641689
Target:  5'- aCGUCCACauGGgaCCGAAGC-CCGg -3'
miRNA:   3'- cGCAGGUGcuUCaaGGCUUCGaGGCg -5'
18554 3' -53 NC_004682.1 + 41409 0.7 0.619471
Target:  5'- uGCGUCggugaccgaGCGAAGcUCCGggGUgaucUCCGUc -3'
miRNA:   3'- -CGCAGg--------UGCUUCaAGGCuuCG----AGGCG- -5'
18554 3' -53 NC_004682.1 + 13115 0.7 0.597298
Target:  5'- aGCGcaUCUACGAGGagcccgUCGAGGCUCCa- -3'
miRNA:   3'- -CGC--AGGUGCUUCaa----GGCUUCGAGGcg -5'
18554 3' -53 NC_004682.1 + 3561 0.7 0.597298
Target:  5'- gGCGcuggCCGaGGAGaUCCGAGGCUugccCCGCg -3'
miRNA:   3'- -CGCa---GGUgCUUCaAGGCUUCGA----GGCG- -5'
18554 3' -53 NC_004682.1 + 1929 0.68 0.729332
Target:  5'- gGCGUUCgucaaggacuGCGAcaagcgcaaGGcUCCGAAGCuguUCCGCa -3'
miRNA:   3'- -CGCAGG----------UGCU---------UCaAGGCUUCG---AGGCG- -5'
18554 3' -53 NC_004682.1 + 10364 0.67 0.781264
Target:  5'- uCGUCCuCGAugacgGGUUCCGAgucgGGgUCuCGCa -3'
miRNA:   3'- cGCAGGuGCU-----UCAAGGCU----UCgAG-GCG- -5'
18554 3' -53 NC_004682.1 + 41193 1.15 0.00073
Target:  5'- gGCGUCCACGAAGUUCCGAAGCUCCGCa -3'
miRNA:   3'- -CGCAGGUGCUUCAAGGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 49338 0.66 0.84706
Target:  5'- -gGUCUucgGCGAAG-UCUGAAGCUCgaaGUa -3'
miRNA:   3'- cgCAGG---UGCUUCaAGGCUUCGAGg--CG- -5'
18554 3' -53 NC_004682.1 + 22240 0.66 0.84706
Target:  5'- --cUCUACGggGggaggCCGGAucGCUCCGg -3'
miRNA:   3'- cgcAGGUGCuuCaa---GGCUU--CGAGGCg -5'
18554 3' -53 NC_004682.1 + 7499 0.66 0.84706
Target:  5'- aGUGgccCCGCGAgagGGUcgCggaGAAGUUCCGCg -3'
miRNA:   3'- -CGCa--GGUGCU---UCAa-Gg--CUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 33246 0.66 0.838273
Target:  5'- cGUGUCCGCGAgcguGGUgaacgCUGGcgugAGCgCCGUg -3'
miRNA:   3'- -CGCAGGUGCU----UCAa----GGCU----UCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 26270 0.66 0.838273
Target:  5'- cGCGUUCGCGggGa--CGuuGUUgCCGCc -3'
miRNA:   3'- -CGCAGGUGCuuCaagGCuuCGA-GGCG- -5'
18554 3' -53 NC_004682.1 + 43458 0.66 0.829266
Target:  5'- uGCGUCgaaguGCGAgaaggcuacGGggCCGcaGAGUUCCGCg -3'
miRNA:   3'- -CGCAGg----UGCU---------UCaaGGC--UUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 3393 0.67 0.801016
Target:  5'- uCGUaCACGccGacaCCGAGGCUCCGUu -3'
miRNA:   3'- cGCAgGUGCuuCaa-GGCUUCGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.