Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18554 | 3' | -53 | NC_004682.1 | + | 18958 | 0.66 | 0.838273 |
Target: 5'- gGCG-CCAagGAGGggCUGAAGUUCgGUg -3' miRNA: 3'- -CGCaGGUg-CUUCaaGGCUUCGAGgCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 19049 | 0.7 | 0.586253 |
Target: 5'- cGCGUCguggagaACGAGGaugaccUCUGggGCUuCCGCg -3' miRNA: 3'- -CGCAGg------UGCUUCa-----AGGCuuCGA-GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 22240 | 0.66 | 0.84706 |
Target: 5'- --cUCUACGggGggaggCCGGAucGCUCCGg -3' miRNA: 3'- cgcAGGUGCuuCaa---GGCUU--CGAGGCg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 22354 | 0.68 | 0.750485 |
Target: 5'- gGUGUCgGCGcGGUgacccaUCCGggGUUCCu- -3' miRNA: 3'- -CGCAGgUGCuUCA------AGGCuuCGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 22831 | 0.67 | 0.771147 |
Target: 5'- aGCGgcCCGgaaGAAGgucCCGGAGC-CCGCg -3' miRNA: 3'- -CGCa-GGUg--CUUCaa-GGCUUCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 23057 | 0.69 | 0.65279 |
Target: 5'- uGCGUUCGCGAuGUgcaGuGGUUCCGCu -3' miRNA: 3'- -CGCAGGUGCUuCAaggCuUCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 23218 | 0.74 | 0.400949 |
Target: 5'- cCGUCCGugaGggGUUCCGcGAGaUCCGCa -3' miRNA: 3'- cGCAGGUg--CuuCAAGGC-UUCgAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 25628 | 0.66 | 0.854772 |
Target: 5'- -gGUCCcguCGAAGUagcgcugUCCGGGcGCUCCa- -3' miRNA: 3'- cgCAGGu--GCUUCA-------AGGCUU-CGAGGcg -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 26251 | 0.7 | 0.641689 |
Target: 5'- cCGUCCGCGAGcUUCCGGugGGUgaaCUGCu -3' miRNA: 3'- cGCAGGUGCUUcAAGGCU--UCGa--GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 26270 | 0.66 | 0.838273 |
Target: 5'- cGCGUUCGCGggGa--CGuuGUUgCCGCc -3' miRNA: 3'- -CGCAGGUGCuuCaagGCuuCGA-GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 26448 | 0.69 | 0.685932 |
Target: 5'- aGCGUCCAgcacCGucGUgCCGAucuuGCUcCCGCc -3' miRNA: 3'- -CGCAGGU----GCuuCAaGGCUu---CGA-GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 26939 | 0.77 | 0.25074 |
Target: 5'- cGCGUCCugGggGUguggCCGguGC-CCGUc -3' miRNA: 3'- -CGCAGGugCuuCAa---GGCuuCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 27391 | 0.69 | 0.690322 |
Target: 5'- gGCGUCCuCGGugaaguccuggccguAGUUCC-AGGCcCCGCc -3' miRNA: 3'- -CGCAGGuGCU---------------UCAAGGcUUCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 29083 | 0.7 | 0.612811 |
Target: 5'- aGCGUCCugccgggagaugucgGCGggGUcggcUUCGA-GCUUCGCc -3' miRNA: 3'- -CGCAGG---------------UGCuuCA----AGGCUuCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 29260 | 0.68 | 0.71212 |
Target: 5'- gGCGgCgAUGAAGUcggcaucggccucgcUCUGGAGgUCCGCa -3' miRNA: 3'- -CGCaGgUGCUUCA---------------AGGCUUCgAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 29913 | 0.67 | 0.771147 |
Target: 5'- cGCGccgaUCCgGCGcAGUUCCuGGAuaccugcuGCUCCGCg -3' miRNA: 3'- -CGC----AGG-UGCuUCAAGG-CUU--------CGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 32314 | 0.71 | 0.553384 |
Target: 5'- gGUGUCCGCGAGcgaggCCaucuGGCUCUGCa -3' miRNA: 3'- -CGCAGGUGCUUcaa--GGcu--UCGAGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 33246 | 0.66 | 0.838273 |
Target: 5'- cGUGUCCGCGAgcguGGUgaacgCUGGcgugAGCgCCGUg -3' miRNA: 3'- -CGCAGGUGCU----UCAa----GGCU----UCGaGGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 36472 | 0.72 | 0.521085 |
Target: 5'- cGCGUCCGCGuacgccucGUUCCGGccucgcAGCgccuccagagCCGCa -3' miRNA: 3'- -CGCAGGUGCuu------CAAGGCU------UCGa---------GGCG- -5' |
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18554 | 3' | -53 | NC_004682.1 | + | 37899 | 0.71 | 0.542544 |
Target: 5'- aUGUCCGCGAAGUUCUcucGCgggugCCGUa -3' miRNA: 3'- cGCAGGUGCUUCAAGGcuuCGa----GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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