miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18554 3' -53 NC_004682.1 + 1929 0.68 0.729332
Target:  5'- gGCGUUCgucaaggacuGCGAcaagcgcaaGGcUCCGAAGCuguUCCGCa -3'
miRNA:   3'- -CGCAGG----------UGCU---------UCaAGGCUUCG---AGGCG- -5'
18554 3' -53 NC_004682.1 + 2065 0.69 0.663871
Target:  5'- -gGUCCGC-AGGgUCCGAccGGC-CCGCa -3'
miRNA:   3'- cgCAGGUGcUUCaAGGCU--UCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 2110 0.69 0.663871
Target:  5'- -gGUCCGCGAGGguucaCCGGAGaagCCGg -3'
miRNA:   3'- cgCAGGUGCUUCaa---GGCUUCga-GGCg -5'
18554 3' -53 NC_004682.1 + 3393 0.67 0.801016
Target:  5'- uCGUaCACGccGacaCCGAGGCUCCGUu -3'
miRNA:   3'- cGCAgGUGCuuCaa-GGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 3561 0.7 0.597298
Target:  5'- gGCGcuggCCGaGGAGaUCCGAGGCUugccCCGCg -3'
miRNA:   3'- -CGCa---GGUgCUUCaAGGCUUCGA----GGCG- -5'
18554 3' -53 NC_004682.1 + 4731 0.72 0.52215
Target:  5'- cGCGgCCACGAAGUggaucgaguaccacgCCGAAGCcgacgaCUGCg -3'
miRNA:   3'- -CGCaGGUGCUUCAa--------------GGCUUCGa-----GGCG- -5'
18554 3' -53 NC_004682.1 + 5138 0.66 0.829266
Target:  5'- cGCGUgCUGCGGGcaucUCCGAGGCcaaggcCCGCg -3'
miRNA:   3'- -CGCA-GGUGCUUca--AGGCUUCGa-----GGCG- -5'
18554 3' -53 NC_004682.1 + 5905 0.67 0.771147
Target:  5'- gGCGUCCAccCGAAGUcgUgGgcGUUCCaGCa -3'
miRNA:   3'- -CGCAGGU--GCUUCAa-GgCuuCGAGG-CG- -5'
18554 3' -53 NC_004682.1 + 7499 0.66 0.84706
Target:  5'- aGUGgccCCGCGAgagGGUcgCggaGAAGUUCCGCg -3'
miRNA:   3'- -CGCa--GGUGCU---UCAa-Gg--CUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 8055 0.7 0.641689
Target:  5'- aCGUCCACauGGgaCCGAAGC-CCGg -3'
miRNA:   3'- cGCAGGUGcuUCaaGGCUUCGaGGCg -5'
18554 3' -53 NC_004682.1 + 9158 0.69 0.663871
Target:  5'- gGCGaCCugGggGacgCUGAggacgAGUUCCGCg -3'
miRNA:   3'- -CGCaGGugCuuCaa-GGCU-----UCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 9409 0.66 0.855617
Target:  5'- aCGgcaCgACGGAGaucaccCCGGAGCUUCGCu -3'
miRNA:   3'- cGCa--GgUGCUUCaa----GGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 10364 0.67 0.781264
Target:  5'- uCGUCCuCGAugacgGGUUCCGAgucgGGgUCuCGCa -3'
miRNA:   3'- cGCAGGuGCU-----UCAAGGCU----UCgAG-GCG- -5'
18554 3' -53 NC_004682.1 + 10870 0.66 0.84706
Target:  5'- uCGUUCGCcGGGUUCCGGuucguccgugcGGCUUaCGCg -3'
miRNA:   3'- cGCAGGUGcUUCAAGGCU-----------UCGAG-GCG- -5'
18554 3' -53 NC_004682.1 + 12682 0.69 0.668296
Target:  5'- gGCGUCCACGAcuacgUCCaccagggggacgaguGAAcgaggacaacguGCUCCGCg -3'
miRNA:   3'- -CGCAGGUGCUuca--AGG---------------CUU------------CGAGGCG- -5'
18554 3' -53 NC_004682.1 + 13115 0.7 0.597298
Target:  5'- aGCGcaUCUACGAGGagcccgUCGAGGCUCCa- -3'
miRNA:   3'- -CGC--AGGUGCUUCaa----GGCUUCGAGGcg -5'
18554 3' -53 NC_004682.1 + 14090 0.73 0.469025
Target:  5'- -gGUCUACGAGGaUagGAGGUUCCGCa -3'
miRNA:   3'- cgCAGGUGCUUCaAggCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 15286 0.66 0.810627
Target:  5'- uCGuUCCGCGAAGaggCCGAccgcgAGUUCgCGCc -3'
miRNA:   3'- cGC-AGGUGCUUCaa-GGCU-----UCGAG-GCG- -5'
18554 3' -53 NC_004682.1 + 17332 0.72 0.521085
Target:  5'- gGCGUUCGCGAAGcuggccCCGcAGCaggCCGCu -3'
miRNA:   3'- -CGCAGGUGCUUCaa----GGCuUCGa--GGCG- -5'
18554 3' -53 NC_004682.1 + 17462 0.73 0.469025
Target:  5'- uGCGcCCACGgcGagaUGAAGUUCCGCu -3'
miRNA:   3'- -CGCaGGUGCuuCaagGCUUCGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.