miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18554 3' -53 NC_004682.1 + 41193 1.15 0.00073
Target:  5'- gGCGUCCACGAAGUUCCGAAGCUCCGCa -3'
miRNA:   3'- -CGCAGGUGCUUCAAGGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 26939 0.77 0.25074
Target:  5'- cGCGUCCugGggGUguggCCGguGC-CCGUc -3'
miRNA:   3'- -CGCAGGugCuuCAa---GGCuuCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 23218 0.74 0.400949
Target:  5'- cCGUCCGugaGggGUUCCGcGAGaUCCGCa -3'
miRNA:   3'- cGCAGGUg--CuuCAAGGC-UUCgAGGCG- -5'
18554 3' -53 NC_004682.1 + 39147 0.73 0.429364
Target:  5'- --cUCCGCGAAGUagUCCu-GGCUCUGCu -3'
miRNA:   3'- cgcAGGUGCUUCA--AGGcuUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 14090 0.73 0.469025
Target:  5'- -gGUCUACGAGGaUagGAGGUUCCGCa -3'
miRNA:   3'- cgCAGGUGCUUCaAggCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 17462 0.73 0.469025
Target:  5'- uGCGcCCACGgcGagaUGAAGUUCCGCu -3'
miRNA:   3'- -CGCaGGUGCuuCaagGCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 36472 0.72 0.521085
Target:  5'- cGCGUCCGCGuacgccucGUUCCGGccucgcAGCgccuccagagCCGCa -3'
miRNA:   3'- -CGCAGGUGCuu------CAAGGCU------UCGa---------GGCG- -5'
18554 3' -53 NC_004682.1 + 17332 0.72 0.521085
Target:  5'- gGCGUUCGCGAAGcuggccCCGcAGCaggCCGCu -3'
miRNA:   3'- -CGCAGGUGCUUCaa----GGCuUCGa--GGCG- -5'
18554 3' -53 NC_004682.1 + 4731 0.72 0.52215
Target:  5'- cGCGgCCACGAAGUggaucgaguaccacgCCGAAGCcgacgaCUGCg -3'
miRNA:   3'- -CGCaGGUGCUUCAa--------------GGCUUCGa-----GGCG- -5'
18554 3' -53 NC_004682.1 + 37899 0.71 0.542544
Target:  5'- aUGUCCGCGAAGUUCUcucGCgggugCCGUa -3'
miRNA:   3'- cGCAGGUGCUUCAAGGcuuCGa----GGCG- -5'
18554 3' -53 NC_004682.1 + 32314 0.71 0.553384
Target:  5'- gGUGUCCGCGAGcgaggCCaucuGGCUCUGCa -3'
miRNA:   3'- -CGCAGGUGCUUcaa--GGcu--UCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 19049 0.7 0.586253
Target:  5'- cGCGUCguggagaACGAGGaugaccUCUGggGCUuCCGCg -3'
miRNA:   3'- -CGCAGg------UGCUUCa-----AGGCuuCGA-GGCG- -5'
18554 3' -53 NC_004682.1 + 13115 0.7 0.597298
Target:  5'- aGCGcaUCUACGAGGagcccgUCGAGGCUCCa- -3'
miRNA:   3'- -CGC--AGGUGCUUCaa----GGCUUCGAGGcg -5'
18554 3' -53 NC_004682.1 + 3561 0.7 0.597298
Target:  5'- gGCGcuggCCGaGGAGaUCCGAGGCUugccCCGCg -3'
miRNA:   3'- -CGCa---GGUgCUUCaAGGCUUCGA----GGCG- -5'
18554 3' -53 NC_004682.1 + 29083 0.7 0.612811
Target:  5'- aGCGUCCugccgggagaugucgGCGggGUcggcUUCGA-GCUUCGCc -3'
miRNA:   3'- -CGCAGG---------------UGCuuCA----AGGCUuCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 41409 0.7 0.619471
Target:  5'- uGCGUCggugaccgaGCGAAGcUCCGggGUgaucUCCGUc -3'
miRNA:   3'- -CGCAGg--------UGCUUCaAGGCuuCG----AGGCG- -5'
18554 3' -53 NC_004682.1 + 26251 0.7 0.641689
Target:  5'- cCGUCCGCGAGcUUCCGGugGGUgaaCUGCu -3'
miRNA:   3'- cGCAGGUGCUUcAAGGCU--UCGa--GGCG- -5'
18554 3' -53 NC_004682.1 + 8055 0.7 0.641689
Target:  5'- aCGUCCACauGGgaCCGAAGC-CCGg -3'
miRNA:   3'- cGCAGGUGcuUCaaGGCUUCGaGGCg -5'
18554 3' -53 NC_004682.1 + 23057 0.69 0.65279
Target:  5'- uGCGUUCGCGAuGUgcaGuGGUUCCGCu -3'
miRNA:   3'- -CGCAGGUGCUuCAaggCuUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 9158 0.69 0.663871
Target:  5'- gGCGaCCugGggGacgCUGAggacgAGUUCCGCg -3'
miRNA:   3'- -CGCaGGugCuuCaa-GGCU-----UCGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.