miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18554 3' -53 NC_004682.1 + 25628 0.66 0.854772
Target:  5'- -gGUCCcguCGAAGUagcgcugUCCGGGcGCUCCa- -3'
miRNA:   3'- cgCAGGu--GCUUCA-------AGGCUU-CGAGGcg -5'
18554 3' -53 NC_004682.1 + 22831 0.67 0.771147
Target:  5'- aGCGgcCCGgaaGAAGgucCCGGAGC-CCGCg -3'
miRNA:   3'- -CGCa-GGUg--CUUCaa-GGCUUCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 29913 0.67 0.771147
Target:  5'- cGCGccgaUCCgGCGcAGUUCCuGGAuaccugcuGCUCCGCg -3'
miRNA:   3'- -CGC----AGG-UGCuUCAAGG-CUU--------CGAGGCG- -5'
18554 3' -53 NC_004682.1 + 40002 0.67 0.781264
Target:  5'- aGCGUCUgcGCGAGG--CCGAGGCccUCgGUg -3'
miRNA:   3'- -CGCAGG--UGCUUCaaGGCUUCG--AGgCG- -5'
18554 3' -53 NC_004682.1 + 42244 0.67 0.785268
Target:  5'- aGCGUCuuCAUGAucacGGggCCGggGUagccagcgcggugcaUCCGCa -3'
miRNA:   3'- -CGCAG--GUGCU----UCaaGGCuuCG---------------AGGCG- -5'
18554 3' -53 NC_004682.1 + 41211 0.67 0.791225
Target:  5'- cGCGgaUCUGCauGGUgucUCCGAugaacucaAGCUCCGCg -3'
miRNA:   3'- -CGC--AGGUGcuUCA---AGGCU--------UCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 15286 0.66 0.810627
Target:  5'- uCGuUCCGCGAAGaggCCGAccgcgAGUUCgCGCc -3'
miRNA:   3'- cGC-AGGUGCUUCaa-GGCU-----UCGAG-GCG- -5'
18554 3' -53 NC_004682.1 + 5138 0.66 0.829266
Target:  5'- cGCGUgCUGCGGGcaucUCCGAGGCcaaggcCCGCg -3'
miRNA:   3'- -CGCA-GGUGCUUca--AGGCUUCGa-----GGCG- -5'
18554 3' -53 NC_004682.1 + 18958 0.66 0.838273
Target:  5'- gGCG-CCAagGAGGggCUGAAGUUCgGUg -3'
miRNA:   3'- -CGCaGGUg-CUUCaaGGCUUCGAGgCG- -5'
18554 3' -53 NC_004682.1 + 5905 0.67 0.771147
Target:  5'- gGCGUCCAccCGAAGUcgUgGgcGUUCCaGCa -3'
miRNA:   3'- -CGCAGGU--GCUUCAa-GgCuuCGAGG-CG- -5'
18554 3' -53 NC_004682.1 + 22354 0.68 0.750485
Target:  5'- gGUGUCgGCGcGGUgacccaUCCGggGUUCCu- -3'
miRNA:   3'- -CGCAGgUGCuUCA------AGGCuuCGAGGcg -5'
18554 3' -53 NC_004682.1 + 29260 0.68 0.71212
Target:  5'- gGCGgCgAUGAAGUcggcaucggccucgcUCUGGAGgUCCGCa -3'
miRNA:   3'- -CGCaGgUGCUUCA---------------AGGCUUCgAGGCG- -5'
18554 3' -53 NC_004682.1 + 14090 0.73 0.469025
Target:  5'- -gGUCUACGAGGaUagGAGGUUCCGCa -3'
miRNA:   3'- cgCAGGUGCUUCaAggCUUCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 36472 0.72 0.521085
Target:  5'- cGCGUCCGCGuacgccucGUUCCGGccucgcAGCgccuccagagCCGCa -3'
miRNA:   3'- -CGCAGGUGCuu------CAAGGCU------UCGa---------GGCG- -5'
18554 3' -53 NC_004682.1 + 37899 0.71 0.542544
Target:  5'- aUGUCCGCGAAGUUCUcucGCgggugCCGUa -3'
miRNA:   3'- cGCAGGUGCUUCAAGGcuuCGa----GGCG- -5'
18554 3' -53 NC_004682.1 + 29083 0.7 0.612811
Target:  5'- aGCGUCCugccgggagaugucgGCGggGUcggcUUCGA-GCUUCGCc -3'
miRNA:   3'- -CGCAGG---------------UGCuuCA----AGGCUuCGAGGCG- -5'
18554 3' -53 NC_004682.1 + 26251 0.7 0.641689
Target:  5'- cCGUCCGCGAGcUUCCGGugGGUgaaCUGCu -3'
miRNA:   3'- cGCAGGUGCUUcAAGGCU--UCGa--GGCG- -5'
18554 3' -53 NC_004682.1 + 2065 0.69 0.663871
Target:  5'- -gGUCCGC-AGGgUCCGAccGGC-CCGCa -3'
miRNA:   3'- cgCAGGUGcUUCaAGGCU--UCGaGGCG- -5'
18554 3' -53 NC_004682.1 + 2110 0.69 0.663871
Target:  5'- -gGUCCGCGAGGguucaCCGGAGaagCCGg -3'
miRNA:   3'- cgCAGGUGCUUCaa---GGCUUCga-GGCg -5'
18554 3' -53 NC_004682.1 + 26448 0.69 0.685932
Target:  5'- aGCGUCCAgcacCGucGUgCCGAucuuGCUcCCGCc -3'
miRNA:   3'- -CGCAGGU----GCuuCAaGGCUu---CGA-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.