Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18555 | 3' | -56.3 | NC_004682.1 | + | 1158 | 0.66 | 0.672479 |
Target: 5'- -uGCuGaGCAGccUCCUCGUcuccgagggugACCGCCGCc -3' miRNA: 3'- ccCG-C-CGUCuaAGGAGUA-----------UGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 2966 | 0.69 | 0.486921 |
Target: 5'- cGGGCGGCGGcgcugggcaguggaAcUCCUCAcccuCCGaCGCg -3' miRNA: 3'- -CCCGCCGUC--------------UaAGGAGUau--GGCgGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 4914 | 0.66 | 0.672479 |
Target: 5'- cGGGCGGCA----CCaCGUACCacuacGUCGCg -3' miRNA: 3'- -CCCGCCGUcuaaGGaGUAUGG-----CGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 4973 | 0.67 | 0.596048 |
Target: 5'- cGGGCGGUcuGGAUcgCCaCAgcgGCUuccaGCCGCa -3' miRNA: 3'- -CCCGCCG--UCUAa-GGaGUa--UGG----CGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 10691 | 0.74 | 0.234976 |
Target: 5'- uGGCGGC-GAUccUgCUCgAUGCUGCCGCa -3' miRNA: 3'- cCCGCCGuCUA--AgGAG-UAUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 14323 | 0.66 | 0.650677 |
Target: 5'- -cGCGGCGG--UCCUCG-ACCuCCGUg -3' miRNA: 3'- ccCGCCGUCuaAGGAGUaUGGcGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 15590 | 0.77 | 0.157573 |
Target: 5'- cGGCGGCAcgg-CCUCGggGCCGCUGCc -3' miRNA: 3'- cCCGCCGUcuaaGGAGUa-UGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 15907 | 0.66 | 0.650677 |
Target: 5'- uGGCGGCAcAUUCCaaGUcgaaGCCgaaGCCGCc -3' miRNA: 3'- cCCGCCGUcUAAGGagUA----UGG---CGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 22125 | 0.66 | 0.672479 |
Target: 5'- cGGCGuCA---UCUUCGUcccGCCGCCGCc -3' miRNA: 3'- cCCGCcGUcuaAGGAGUA---UGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 23789 | 0.67 | 0.585176 |
Target: 5'- aGGGCGaGUGGGacaUCCUCGUcuucucgaagAUCGaCCGCa -3' miRNA: 3'- -CCCGC-CGUCUa--AGGAGUA----------UGGC-GGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 24607 | 0.66 | 0.661591 |
Target: 5'- cGGaCGGCaccgAGGUgaccuaCCggaCGUACCGCUGCg -3' miRNA: 3'- cCC-GCCG----UCUAa-----GGa--GUAUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 26232 | 0.68 | 0.552827 |
Target: 5'- --cCGGUAGGUcaCCUCgGUGCCGuCCGCg -3' miRNA: 3'- cccGCCGUCUAa-GGAG-UAUGGC-GGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 29036 | 0.67 | 0.585176 |
Target: 5'- cGGGauCGGCAGcgg---CAUGCCGaCCGCa -3' miRNA: 3'- -CCC--GCCGUCuaaggaGUAUGGC-GGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 34507 | 0.76 | 0.166378 |
Target: 5'- gGGcGCGGCcccagUCCuUCAUGCCGUCGCg -3' miRNA: 3'- -CC-CGCCGucua-AGG-AGUAUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 35931 | 0.7 | 0.398978 |
Target: 5'- -uGCGGUAGAacugcuuugcggCCUC--GCCGCCGCa -3' miRNA: 3'- ccCGCCGUCUaa----------GGAGuaUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 39689 | 0.7 | 0.429712 |
Target: 5'- -uGCGGCAGcgUCaUCcggcccccagcagGUACCGCUGCg -3' miRNA: 3'- ccCGCCGUCuaAGgAG-------------UAUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 40500 | 1.14 | 0.000364 |
Target: 5'- aGGGCGGCAGAUUCCUCAUACCGCCGCu -3' miRNA: 3'- -CCCGCCGUCUAAGGAGUAUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 40593 | 0.68 | 0.531558 |
Target: 5'- cGGCGGC-GAUggcCCgagcCAUGCaguGCCGCg -3' miRNA: 3'- cCCGCCGuCUAa--GGa---GUAUGg--CGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 42207 | 0.7 | 0.430665 |
Target: 5'- cGGCGGCGucaaUCUUCuUGCCGCUGUc -3' miRNA: 3'- cCCGCCGUcua-AGGAGuAUGGCGGCG- -5' |
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18555 | 3' | -56.3 | NC_004682.1 | + | 43114 | 0.68 | 0.510592 |
Target: 5'- cGGGCaccggggaucuuGGuCAGGUUgcCCUCgAUugCGCCGUg -3' miRNA: 3'- -CCCG------------CC-GUCUAA--GGAG-UAugGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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