Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18555 | 3' | -56.3 | NC_004682.1 | + | 50046 | 0.66 | 0.616779 |
Target: 5'- aGGGUGGCGuucGGUcggucgcuUCCUCcuggcucGUaACUGCCGCu -3' miRNA: 3'- -CCCGCCGU---CUA--------AGGAG-------UA-UGGCGGCG- -5' |
|||||||
18555 | 3' | -56.3 | NC_004682.1 | + | 50095 | 0.66 | 0.617872 |
Target: 5'- cGGGCGuugcccucaGCGGAUgaCUUCuUGCCGUgGCa -3' miRNA: 3'- -CCCGC---------CGUCUAa-GGAGuAUGGCGgCG- -5' |
|||||||
18555 | 3' | -56.3 | NC_004682.1 | + | 50345 | 0.66 | 0.672479 |
Target: 5'- aGGGCGGCg----CgUCGgugAgCGCCGCc -3' miRNA: 3'- -CCCGCCGucuaaGgAGUa--UgGCGGCG- -5' |
|||||||
18555 | 3' | -56.3 | NC_004682.1 | + | 50498 | 0.66 | 0.672479 |
Target: 5'- gGGGCGGC----UCCUCGgaggGCCGa-GCc -3' miRNA: 3'- -CCCGCCGucuaAGGAGUa---UGGCggCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home