miRNA: 3'- cCCGCCGuCUA--AgGAG-UAUGGCGGCG- -5'
miRNA: 3'- -CC-CGCCGucua-AGG-AGUAUGGCGGCG- -5'
miRNA: 3'- cCCGCCGUcuaaGGAGUa-UGGCGGCG- -5'
miRNA: 3'- -CCCGCCGUCUAAGGAGUAUGGCGGCG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18555 | 3' | -56.3 | NC_004682.1 | + | 10691 | 0.74 | 0.234976 |
|
Target: 5'- uGGCGGC-GAUccUgCUCgAUGCUGCCGCa -3' miRNA: 3'- cCCGCCGuCUA--AgGAG-UAUGGCGGCG- -5' |
|||||||
| 18555 | 3' | -56.3 | NC_004682.1 | + | 34507 | 0.76 | 0.166378 |
|
Target: 5'- gGGcGCGGCcccagUCCuUCAUGCCGUCGCg -3' miRNA: 3'- -CC-CGCCGucua-AGG-AGUAUGGCGGCG- -5' |
|||||||
| 18555 | 3' | -56.3 | NC_004682.1 | + | 15590 | 0.77 | 0.157573 |
|
Target: 5'- cGGCGGCAcgg-CCUCGggGCCGCUGCc -3' miRNA: 3'- cCCGCCGUcuaaGGAGUa-UGGCGGCG- -5' |
|||||||
| 18555 | 3' | -56.3 | NC_004682.1 | + | 40500 | 1.14 | 0.000364 |
|
Target: 5'- aGGGCGGCAGAUUCCUCAUACCGCCGCu -3' miRNA: 3'- -CCCGCCGUCUAAGGAGUAUGGCGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home