Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18555 | 5' | -51.2 | NC_004682.1 | + | 11119 | 0.68 | 0.804187 |
Target: 5'- gCCGCGaCGGaccaaggCCAGGAGCCgaaggucgagacguUCAGCCg -3' miRNA: 3'- -GGUGUcGUCaa-----GGUUCUUGG--------------AGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 12513 | 0.68 | 0.797228 |
Target: 5'- aCACGGUGG--CCAAGAGCCU--GCCc -3' miRNA: 3'- gGUGUCGUCaaGGUUCUUGGAguCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 43679 | 0.68 | 0.797228 |
Target: 5'- aCGCAGCccaccAGUU-CAGGAcGCCcCAGCCg -3' miRNA: 3'- gGUGUCG-----UCAAgGUUCU-UGGaGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 25979 | 0.68 | 0.797228 |
Target: 5'- uCCGCucgaAGUAGaUCCGcucguCCUCAGCCg -3' miRNA: 3'- -GGUG----UCGUCaAGGUucuu-GGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 456 | 0.68 | 0.787129 |
Target: 5'- uCCAgGGcCGGUaUCCAGcGGCCUCcagGGCCg -3' miRNA: 3'- -GGUgUC-GUCA-AGGUUcUUGGAG---UCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 29345 | 0.68 | 0.776859 |
Target: 5'- aCCGC-GUAGaccUUCCAGcGGCCUguGCCg -3' miRNA: 3'- -GGUGuCGUC---AAGGUUcUUGGAguCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 33398 | 0.68 | 0.776859 |
Target: 5'- gCGCAGUAGcgCUucuccccguuGGGGGCCUCcugAGCCg -3' miRNA: 3'- gGUGUCGUCaaGG----------UUCUUGGAG---UCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 38012 | 0.68 | 0.776859 |
Target: 5'- uCgACAGCgccuccucGGUgCCGAGGuGCCUCAGCg -3' miRNA: 3'- -GgUGUCG--------UCAaGGUUCU-UGGAGUCGg -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 17708 | 0.69 | 0.75585 |
Target: 5'- gCUGCAGCAGaUCCAGccGAugauCCcCGGCCu -3' miRNA: 3'- -GGUGUCGUCaAGGUU--CUu---GGaGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 8953 | 0.69 | 0.75585 |
Target: 5'- aUCGCAGCGcg-CCAGGAgcuugaggGCUUCGGCUc -3' miRNA: 3'- -GGUGUCGUcaaGGUUCU--------UGGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 20261 | 0.69 | 0.75585 |
Target: 5'- cCCGCguguggAGCAGgucucgUCgGAGAACggCAGCCa -3' miRNA: 3'- -GGUG------UCGUCa-----AGgUUCUUGgaGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 12912 | 0.69 | 0.75585 |
Target: 5'- uUCACGGCccgAGgaaCAAGAACUaCGGCCa -3' miRNA: 3'- -GGUGUCG---UCaagGUUCUUGGaGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 36988 | 0.69 | 0.745137 |
Target: 5'- gCGCGGgccuGUgCCAGGuugGCCUCGGCCu -3' miRNA: 3'- gGUGUCgu--CAaGGUUCu--UGGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 30074 | 0.69 | 0.745137 |
Target: 5'- aCCACccGGUAGUgaUCCAuGAACC-CGGaCCa -3' miRNA: 3'- -GGUG--UCGUCA--AGGUuCUUGGaGUC-GG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 3526 | 0.69 | 0.745137 |
Target: 5'- aCGCGGCAGcggcuggCCAAGGACCcgcUAGUCc -3' miRNA: 3'- gGUGUCGUCaa-----GGUUCUUGGa--GUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 17466 | 0.69 | 0.729936 |
Target: 5'- cCCACGGCgagaugaAGUUCCGcucuGGggUCUCcaagaagaccggcaAGCCg -3' miRNA: 3'- -GGUGUCG-------UCAAGGU----UCuuGGAG--------------UCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 42344 | 0.69 | 0.723356 |
Target: 5'- aUCACcGCG--UCCAGGAACCgcucgCAGUCg -3' miRNA: 3'- -GGUGuCGUcaAGGUUCUUGGa----GUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 38535 | 0.69 | 0.723356 |
Target: 5'- gCCGCAGCAGagcgagcgugUUguAGAGCCgUGGCCg -3' miRNA: 3'- -GGUGUCGUCa---------AGguUCUUGGaGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 23070 | 0.69 | 0.723356 |
Target: 5'- -uGCAGUGGUUCCGcugccaccGGAacgGCCUCAuuGCCc -3' miRNA: 3'- ggUGUCGUCAAGGU--------UCU---UGGAGU--CGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 5080 | 0.69 | 0.722256 |
Target: 5'- aCGCAGUAGUcaucgucUCgAAGcacaucGGCUUCAGCCa -3' miRNA: 3'- gGUGUCGUCA-------AGgUUC------UUGGAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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