Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18555 | 5' | -51.2 | NC_004682.1 | + | 12394 | 0.66 | 0.870447 |
Target: 5'- cCCgACGGUGGgcgugCCAGGAGCacaggcguggCAGCCg -3' miRNA: 3'- -GG-UGUCGUCaa---GGUUCUUGga--------GUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 42218 | 0.66 | 0.870447 |
Target: 5'- gCAUgAGCugAGUUCCccuGAGCUUCAGCg -3' miRNA: 3'- gGUG-UCG--UCAAGGuu-CUUGGAGUCGg -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 20126 | 0.66 | 0.869627 |
Target: 5'- -uGCGGCGGUgcuuccuggCCGAcGAgggccaauugaugGCCUCAGUCg -3' miRNA: 3'- ggUGUCGUCAa--------GGUU-CU-------------UGGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 16548 | 0.67 | 0.862126 |
Target: 5'- gCGcCAGCAGga-CAAGAcCCUgaCGGCCa -3' miRNA: 3'- gGU-GUCGUCaagGUUCUuGGA--GUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 26931 | 0.67 | 0.86128 |
Target: 5'- gUCGCGGUAGUucagcucauguugUCCucggcgaagacgAGGAucuucccguggGCCUCAGCCc -3' miRNA: 3'- -GGUGUCGUCA-------------AGG------------UUCU-----------UGGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 45714 | 0.67 | 0.85355 |
Target: 5'- cCCGCAGCAcGcgCCAGGA---UCGGCg -3' miRNA: 3'- -GGUGUCGU-CaaGGUUCUuggAGUCGg -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 28290 | 0.67 | 0.85355 |
Target: 5'- aUACAGCAGgg-CGuuGGCCUCGGCa -3' miRNA: 3'- gGUGUCGUCaagGUucUUGGAGUCGg -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 19034 | 0.67 | 0.848284 |
Target: 5'- aCCACGGUAGUgaUCCGcgucguggagaacgaGGAugACCUCuggGGCUu -3' miRNA: 3'- -GGUGUCGUCA--AGGU---------------UCU--UGGAG---UCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 43485 | 0.67 | 0.844725 |
Target: 5'- gCCGCAG-AGUUCCGcgagcgAGAGCg-CGGCUg -3' miRNA: 3'- -GGUGUCgUCAAGGU------UCUUGgaGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 6978 | 0.67 | 0.844725 |
Target: 5'- aCCGCAGgcggaacucgaCGGUgaUCCAAuGAGCCUUgaagaGGCCc -3' miRNA: 3'- -GGUGUC-----------GUCA--AGGUU-CUUGGAG-----UCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 37924 | 0.67 | 0.835662 |
Target: 5'- gCCGUAGUucuuGUUCCucGGGCCgugaaUCAGCCg -3' miRNA: 3'- -GGUGUCGu---CAAGGuuCUUGG-----AGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 24818 | 0.67 | 0.835662 |
Target: 5'- cCUACGGCGGgagUCCGAcgccGGCCUCAucGCg -3' miRNA: 3'- -GGUGUCGUCa--AGGUUc---UUGGAGU--CGg -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 27102 | 0.67 | 0.835662 |
Target: 5'- aCC-CAGcCAGgaucUCCAGcaccugauGGACCUCGGUCg -3' miRNA: 3'- -GGuGUC-GUCa---AGGUU--------CUUGGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 23731 | 0.67 | 0.82637 |
Target: 5'- gCCACGGUcucaccguuugAGcggCCA--GACCUCGGCCc -3' miRNA: 3'- -GGUGUCG-----------UCaa-GGUucUUGGAGUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 23871 | 0.67 | 0.826369 |
Target: 5'- aCACGGUcaacaAGUUCCu-GGGCCUgacgggcacCGGCCa -3' miRNA: 3'- gGUGUCG-----UCAAGGuuCUUGGA---------GUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 43876 | 0.67 | 0.826369 |
Target: 5'- cCCGCcuGCGGUacuccUCCAGGAcgguguggacuGCCUCcccugcgggAGCCa -3' miRNA: 3'- -GGUGu-CGUCA-----AGGUUCU-----------UGGAG---------UCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 39148 | 0.68 | 0.816859 |
Target: 5'- gCCAUaucaGGCGugauccGUUcaCCAAGAACCUgcaCAGCCg -3' miRNA: 3'- -GGUG----UCGU------CAA--GGUUCUUGGA---GUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 1273 | 0.68 | 0.807142 |
Target: 5'- -gACGGUGGUUCgCAAGGACCcgaUgAGCUa -3' miRNA: 3'- ggUGUCGUCAAG-GUUCUUGG---AgUCGG- -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 39735 | 0.68 | 0.807142 |
Target: 5'- cCCG-AGCAGUgCgAAGAcgaucACCUCAGCg -3' miRNA: 3'- -GGUgUCGUCAaGgUUCU-----UGGAGUCGg -5' |
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18555 | 5' | -51.2 | NC_004682.1 | + | 39580 | 0.68 | 0.807142 |
Target: 5'- uCUGCGGCucGUauUCCuucacGACCUCAGCCc -3' miRNA: 3'- -GGUGUCGu-CA--AGGuuc--UUGGAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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