miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 21463 0.71 0.644721
Target:  5'- aCGCcGUGGUUCCuGGGGACCUCcccacaGGCCc -3'
miRNA:   3'- gGUGuCGUCAAGG-UUCUUGGAG------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 32477 0.71 0.644721
Target:  5'- cCCACAGaCuGacCCGAGuagcucacccAGCCUCGGCCc -3'
miRNA:   3'- -GGUGUC-GuCaaGGUUC----------UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 35687 0.71 0.65495
Target:  5'- cCCACAGguGgcgUCCAccggggAGGAUCuugaacuccuccaUCAGCCg -3'
miRNA:   3'- -GGUGUCguCa--AGGU------UCUUGG-------------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 4988 0.7 0.666293
Target:  5'- gCCACAGCGGcUUCCAGccgcagggcuacuGGAUCUCGuucgaccagugcGCCa -3'
miRNA:   3'- -GGUGUCGUC-AAGGUU-------------CUUGGAGU------------CGG- -5'
18555 5' -51.2 NC_004682.1 + 32888 0.7 0.667426
Target:  5'- -aGCGGCAGgaucgCCGGcaucauucgugcGAacGCCUCAGCCa -3'
miRNA:   3'- ggUGUCGUCaa---GGUU------------CU--UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 44069 0.7 0.678731
Target:  5'- gCCGCAgGCGGUgguggaacUCCAAGccuGCCUCcGUCg -3'
miRNA:   3'- -GGUGU-CGUCA--------AGGUUCu--UGGAGuCGG- -5'
18555 5' -51.2 NC_004682.1 + 43146 0.7 0.678731
Target:  5'- gCCACgcuccgguccaGGCGGUcgUCCcGGccuucuuggcGACCUCGGCCa -3'
miRNA:   3'- -GGUG-----------UCGUCA--AGGuUC----------UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 34883 0.7 0.689989
Target:  5'- -gACAGCgacgAGUUCC-AGAACCcCGGCUc -3'
miRNA:   3'- ggUGUCG----UCAAGGuUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 5080 0.69 0.722256
Target:  5'- aCGCAGUAGUcaucgucUCgAAGcacaucGGCUUCAGCCa -3'
miRNA:   3'- gGUGUCGUCA-------AGgUUC------UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 38535 0.69 0.723356
Target:  5'- gCCGCAGCAGagcgagcgugUUguAGAGCCgUGGCCg -3'
miRNA:   3'- -GGUGUCGUCa---------AGguUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 23070 0.69 0.723356
Target:  5'- -uGCAGUGGUUCCGcugccaccGGAacgGCCUCAuuGCCc -3'
miRNA:   3'- ggUGUCGUCAAGGU--------UCU---UGGAGU--CGG- -5'
18555 5' -51.2 NC_004682.1 + 42344 0.69 0.723356
Target:  5'- aUCACcGCG--UCCAGGAACCgcucgCAGUCg -3'
miRNA:   3'- -GGUGuCGUcaAGGUUCUUGGa----GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 17466 0.69 0.729936
Target:  5'- cCCACGGCgagaugaAGUUCCGcucuGGggUCUCcaagaagaccggcaAGCCg -3'
miRNA:   3'- -GGUGUCG-------UCAAGGU----UCuuGGAG--------------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 30074 0.69 0.745137
Target:  5'- aCCACccGGUAGUgaUCCAuGAACC-CGGaCCa -3'
miRNA:   3'- -GGUG--UCGUCA--AGGUuCUUGGaGUC-GG- -5'
18555 5' -51.2 NC_004682.1 + 36988 0.69 0.745137
Target:  5'- gCGCGGgccuGUgCCAGGuugGCCUCGGCCu -3'
miRNA:   3'- gGUGUCgu--CAaGGUUCu--UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 3526 0.69 0.745137
Target:  5'- aCGCGGCAGcggcuggCCAAGGACCcgcUAGUCc -3'
miRNA:   3'- gGUGUCGUCaa-----GGUUCUUGGa--GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 17708 0.69 0.75585
Target:  5'- gCUGCAGCAGaUCCAGccGAugauCCcCGGCCu -3'
miRNA:   3'- -GGUGUCGUCaAGGUU--CUu---GGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 8953 0.69 0.75585
Target:  5'- aUCGCAGCGcg-CCAGGAgcuugaggGCUUCGGCUc -3'
miRNA:   3'- -GGUGUCGUcaaGGUUCU--------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20261 0.69 0.75585
Target:  5'- cCCGCguguggAGCAGgucucgUCgGAGAACggCAGCCa -3'
miRNA:   3'- -GGUG------UCGUCa-----AGgUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 12912 0.69 0.75585
Target:  5'- uUCACGGCccgAGgaaCAAGAACUaCGGCCa -3'
miRNA:   3'- -GGUGUCG---UCaagGUUCUUGGaGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.