miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 17466 0.69 0.729936
Target:  5'- cCCACGGCgagaugaAGUUCCGcucuGGggUCUCcaagaagaccggcaAGCCg -3'
miRNA:   3'- -GGUGUCG-------UCAAGGU----UCuuGGAG--------------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 17708 0.69 0.75585
Target:  5'- gCUGCAGCAGaUCCAGccGAugauCCcCGGCCu -3'
miRNA:   3'- -GGUGUCGUCaAGGUU--CUu---GGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 19034 0.67 0.848284
Target:  5'- aCCACGGUAGUgaUCCGcgucguggagaacgaGGAugACCUCuggGGCUu -3'
miRNA:   3'- -GGUGUCGUCA--AGGU---------------UCU--UGGAG---UCGG- -5'
18555 5' -51.2 NC_004682.1 + 20006 0.78 0.280713
Target:  5'- uCgACAGCAGggacUCCAAGGACCgCuGCCa -3'
miRNA:   3'- -GgUGUCGUCa---AGGUUCUUGGaGuCGG- -5'
18555 5' -51.2 NC_004682.1 + 20126 0.66 0.893056
Target:  5'- gCCACAGCcGUugaUCCAAGcggucucgucgcuGACCgaCAGCg -3'
miRNA:   3'- -GGUGUCGuCA---AGGUUC-------------UUGGa-GUCGg -5'
18555 5' -51.2 NC_004682.1 + 20126 0.66 0.869627
Target:  5'- -uGCGGCGGUgcuuccuggCCGAcGAgggccaauugaugGCCUCAGUCg -3'
miRNA:   3'- ggUGUCGUCAa--------GGUU-CU-------------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20261 0.69 0.75585
Target:  5'- cCCGCguguggAGCAGgucucgUCgGAGAACggCAGCCa -3'
miRNA:   3'- -GGUG------UCGUCa-----AGgUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20313 0.66 0.901019
Target:  5'- cCCGgAGCGGaaguacgCCAAGAcggugaACUUCGGCa -3'
miRNA:   3'- -GGUgUCGUCaa-----GGUUCU------UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 20354 0.74 0.467877
Target:  5'- uCUACGGCGGUggugCCAAGAcggugGCCgagCAGaCCg -3'
miRNA:   3'- -GGUGUCGUCAa---GGUUCU-----UGGa--GUC-GG- -5'
18555 5' -51.2 NC_004682.1 + 20915 0.73 0.499538
Target:  5'- -aGCAGCAGgcuaUCCAGGAACUgc-GCCg -3'
miRNA:   3'- ggUGUCGUCa---AGGUUCUUGGaguCGG- -5'
18555 5' -51.2 NC_004682.1 + 21272 0.66 0.886288
Target:  5'- aCgACAGCAGaucgUUCGAGAccaaCUCGGCg -3'
miRNA:   3'- -GgUGUCGUCa---AGGUUCUug--GAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 21463 0.71 0.644721
Target:  5'- aCGCcGUGGUUCCuGGGGACCUCcccacaGGCCc -3'
miRNA:   3'- gGUGuCGUCAAGG-UUCUUGGAG------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 22033 0.66 0.878503
Target:  5'- aUCGCAGCAGgaCUGAucGCCcuguccgcucUCGGCCu -3'
miRNA:   3'- -GGUGUCGUCaaGGUUcuUGG----------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 23070 0.69 0.723356
Target:  5'- -uGCAGUGGUUCCGcugccaccGGAacgGCCUCAuuGCCc -3'
miRNA:   3'- ggUGUCGUCAAGGU--------UCU---UGGAGU--CGG- -5'
18555 5' -51.2 NC_004682.1 + 23130 0.66 0.886288
Target:  5'- aCCGuCAGguGaguugcggCCAGGAGCCaCAGCg -3'
miRNA:   3'- -GGU-GUCguCaa------GGUUCUUGGaGUCGg -5'
18555 5' -51.2 NC_004682.1 + 23431 0.66 0.878503
Target:  5'- ---uGGCGGggCCuGGAACUaCGGCCa -3'
miRNA:   3'- ggugUCGUCaaGGuUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 23731 0.67 0.82637
Target:  5'- gCCACGGUcucaccguuugAGcggCCA--GACCUCGGCCc -3'
miRNA:   3'- -GGUGUCG-----------UCaa-GGUucUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 23871 0.67 0.826369
Target:  5'- aCACGGUcaacaAGUUCCu-GGGCCUgacgggcacCGGCCa -3'
miRNA:   3'- gGUGUCG-----UCAAGGuuCUUGGA---------GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 24550 0.77 0.303393
Target:  5'- gCCACuGCGGggCCuguGGAGCCUCucuuGCCc -3'
miRNA:   3'- -GGUGuCGUCaaGGu--UCUUGGAGu---CGG- -5'
18555 5' -51.2 NC_004682.1 + 24818 0.67 0.835662
Target:  5'- cCUACGGCGGgagUCCGAcgccGGCCUCAucGCg -3'
miRNA:   3'- -GGUGUCGUCa--AGGUUc---UUGGAGU--CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.