miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 29660 0.66 0.901018
Target:  5'- gCCAcCAGguGgUCgAGGAucuCCUgAGCCu -3'
miRNA:   3'- -GGU-GUCguCaAGgUUCUu--GGAgUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11004 0.66 0.893795
Target:  5'- uUCGCGGCuGg--CAAGAGCg-CAGCCg -3'
miRNA:   3'- -GGUGUCGuCaagGUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 21272 0.66 0.886288
Target:  5'- aCgACAGCAGaucgUUCGAGAccaaCUCGGCg -3'
miRNA:   3'- -GgUGUCGUCa---AGGUUCUug--GAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 37924 0.67 0.835662
Target:  5'- gCCGUAGUucuuGUUCCucGGGCCgugaaUCAGCCg -3'
miRNA:   3'- -GGUGUCGu---CAAGGuuCUUGG-----AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 26931 0.67 0.86128
Target:  5'- gUCGCGGUAGUucagcucauguugUCCucggcgaagacgAGGAucuucccguggGCCUCAGCCc -3'
miRNA:   3'- -GGUGUCGUCA-------------AGG------------UUCU-----------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 16548 0.67 0.862126
Target:  5'- gCGcCAGCAGga-CAAGAcCCUgaCGGCCa -3'
miRNA:   3'- gGU-GUCGUCaagGUUCUuGGA--GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 27102 0.67 0.835662
Target:  5'- aCC-CAGcCAGgaucUCCAGcaccugauGGACCUCGGUCg -3'
miRNA:   3'- -GGuGUC-GUCa---AGGUU--------CUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43876 0.67 0.826369
Target:  5'- cCCGCcuGCGGUacuccUCCAGGAcgguguggacuGCCUCcccugcgggAGCCa -3'
miRNA:   3'- -GGUGu-CGUCA-----AGGUUCU-----------UGGAG---------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 23871 0.67 0.826369
Target:  5'- aCACGGUcaacaAGUUCCu-GGGCCUgacgggcacCGGCCa -3'
miRNA:   3'- gGUGUCG-----UCAAGGuuCUUGGA---------GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 45714 0.67 0.85355
Target:  5'- cCCGCAGCAcGcgCCAGGA---UCGGCg -3'
miRNA:   3'- -GGUGUCGU-CaaGGUUCUuggAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 19034 0.67 0.848284
Target:  5'- aCCACGGUAGUgaUCCGcgucguggagaacgaGGAugACCUCuggGGCUu -3'
miRNA:   3'- -GGUGUCGUCA--AGGU---------------UCU--UGGAG---UCGG- -5'
18555 5' -51.2 NC_004682.1 + 43485 0.67 0.844725
Target:  5'- gCCGCAG-AGUUCCGcgagcgAGAGCg-CGGCUg -3'
miRNA:   3'- -GGUGUCgUCAAGGU------UCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 6978 0.67 0.844725
Target:  5'- aCCGCAGgcggaacucgaCGGUgaUCCAAuGAGCCUUgaagaGGCCc -3'
miRNA:   3'- -GGUGUC-----------GUCA--AGGUU-CUUGGAG-----UCGG- -5'
18555 5' -51.2 NC_004682.1 + 24818 0.67 0.835662
Target:  5'- cCUACGGCGGgagUCCGAcgccGGCCUCAucGCg -3'
miRNA:   3'- -GGUGUCGUCa--AGGUUc---UUGGAGU--CGg -5'
18555 5' -51.2 NC_004682.1 + 23731 0.67 0.82637
Target:  5'- gCCACGGUcucaccguuugAGcggCCA--GACCUCGGCCc -3'
miRNA:   3'- -GGUGUCG-----------UCaa-GGUucUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 28290 0.67 0.85355
Target:  5'- aUACAGCAGgg-CGuuGGCCUCGGCa -3'
miRNA:   3'- gGUGUCGUCaagGUucUUGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 25979 0.68 0.797228
Target:  5'- uCCGCucgaAGUAGaUCCGcucguCCUCAGCCg -3'
miRNA:   3'- -GGUG----UCGUCaAGGUucuu-GGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11119 0.68 0.804187
Target:  5'- gCCGCGaCGGaccaaggCCAGGAGCCgaaggucgagacguUCAGCCg -3'
miRNA:   3'- -GGUGUcGUCaa-----GGUUCUUGG--------------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 39735 0.68 0.807142
Target:  5'- cCCG-AGCAGUgCgAAGAcgaucACCUCAGCg -3'
miRNA:   3'- -GGUgUCGUCAaGgUUCU-----UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 39148 0.68 0.816859
Target:  5'- gCCAUaucaGGCGugauccGUUcaCCAAGAACCUgcaCAGCCg -3'
miRNA:   3'- -GGUG----UCGU------CAA--GGUUCUUGGA---GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.