miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 456 0.68 0.787129
Target:  5'- uCCAgGGcCGGUaUCCAGcGGCCUCcagGGCCg -3'
miRNA:   3'- -GGUgUC-GUCA-AGGUUcUUGGAG---UCGG- -5'
18555 5' -51.2 NC_004682.1 + 1273 0.68 0.807142
Target:  5'- -gACGGUGGUUCgCAAGGACCcgaUgAGCUa -3'
miRNA:   3'- ggUGUCGUCAAG-GUUCUUGG---AgUCGG- -5'
18555 5' -51.2 NC_004682.1 + 1995 0.66 0.907955
Target:  5'- aCACGGCGGUUggccccCCGAG-GCCgaCGGCg -3'
miRNA:   3'- gGUGUCGUCAA------GGUUCuUGGa-GUCGg -5'
18555 5' -51.2 NC_004682.1 + 3526 0.69 0.745137
Target:  5'- aCGCGGCAGcggcuggCCAAGGACCcgcUAGUCc -3'
miRNA:   3'- gGUGUCGUCaa-----GGUUCUUGGa--GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 4067 0.66 0.878503
Target:  5'- -aGCAGCGGUcUCCAA-AGCCgcCGGCUg -3'
miRNA:   3'- ggUGUCGUCA-AGGUUcUUGGa-GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 4988 0.7 0.666293
Target:  5'- gCCACAGCGGcUUCCAGccgcagggcuacuGGAUCUCGuucgaccagugcGCCa -3'
miRNA:   3'- -GGUGUCGUC-AAGGUU-------------CUUGGAGU------------CGG- -5'
18555 5' -51.2 NC_004682.1 + 5080 0.69 0.722256
Target:  5'- aCGCAGUAGUcaucgucUCgAAGcacaucGGCUUCAGCCa -3'
miRNA:   3'- gGUGUCGUCA-------AGgUUC------UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 6978 0.67 0.844725
Target:  5'- aCCGCAGgcggaacucgaCGGUgaUCCAAuGAGCCUUgaagaGGCCc -3'
miRNA:   3'- -GGUGUC-----------GUCA--AGGUU-CUUGGAG-----UCGG- -5'
18555 5' -51.2 NC_004682.1 + 8953 0.69 0.75585
Target:  5'- aUCGCAGCGcg-CCAGGAgcuugaggGCUUCGGCUc -3'
miRNA:   3'- -GGUGUCGUcaaGGUUCU--------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 9627 0.66 0.901018
Target:  5'- gCC-CAGCAGUUCagcgcugcGGAGCUUCGGa- -3'
miRNA:   3'- -GGuGUCGUCAAGgu------UCUUGGAGUCgg -5'
18555 5' -51.2 NC_004682.1 + 10821 0.81 0.181982
Target:  5'- gCUACGGuCGGccaCCGAGGGCCUCGGCCu -3'
miRNA:   3'- -GGUGUC-GUCaa-GGUUCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11004 0.66 0.893795
Target:  5'- uUCGCGGCuGg--CAAGAGCg-CAGCCg -3'
miRNA:   3'- -GGUGUCGuCaagGUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11119 0.68 0.804187
Target:  5'- gCCGCGaCGGaccaaggCCAGGAGCCgaaggucgagacguUCAGCCg -3'
miRNA:   3'- -GGUGUcGUCaa-----GGUUCUUGG--------------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11135 0.72 0.599251
Target:  5'- cCCGCAGCGGUaccugCUggGGGCCggaugacgCuGCCg -3'
miRNA:   3'- -GGUGUCGUCAa----GGuuCUUGGa-------GuCGG- -5'
18555 5' -51.2 NC_004682.1 + 12394 0.66 0.870447
Target:  5'- cCCgACGGUGGgcgugCCAGGAGCacaggcguggCAGCCg -3'
miRNA:   3'- -GG-UGUCGUCaa---GGUUCUUGga--------GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 12513 0.68 0.797228
Target:  5'- aCACGGUGG--CCAAGAGCCU--GCCc -3'
miRNA:   3'- gGUGUCGUCaaGGUUCUUGGAguCGG- -5'
18555 5' -51.2 NC_004682.1 + 12912 0.69 0.75585
Target:  5'- uUCACGGCccgAGgaaCAAGAACUaCGGCCa -3'
miRNA:   3'- -GGUGUCG---UCaagGUUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 12965 0.82 0.162634
Target:  5'- aUCGCGGCGcGUUCuCGGGGuACCUCGGCCa -3'
miRNA:   3'- -GGUGUCGU-CAAG-GUUCU-UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 16548 0.67 0.862126
Target:  5'- gCGcCAGCAGga-CAAGAcCCUgaCGGCCa -3'
miRNA:   3'- gGU-GUCGUCaagGUUCUuGGA--GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 16994 0.72 0.554252
Target:  5'- -gACGGCGGUcUCCGgggucuucgagcAGGGCCUCAaGCCc -3'
miRNA:   3'- ggUGUCGUCA-AGGU------------UCUUGGAGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.