miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 50490 0.66 0.901019
Target:  5'- gCCGCuugggGGCGGcUCCucgGAGGGCCg-AGCCa -3'
miRNA:   3'- -GGUG-----UCGUCaAGG---UUCUUGGagUCGG- -5'
18555 5' -51.2 NC_004682.1 + 46750 0.76 0.352903
Target:  5'- aCACGGCAGga-CucGAACCUgCAGCCg -3'
miRNA:   3'- gGUGUCGUCaagGuuCUUGGA-GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 45781 0.66 0.89453
Target:  5'- gCGUAGCGGUccaugaucagUCCuccuccuugaugccuAGAGCCUCAGCg -3'
miRNA:   3'- gGUGUCGUCA----------AGGu--------------UCUUGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 45714 0.67 0.85355
Target:  5'- cCCGCAGCAcGcgCCAGGA---UCGGCg -3'
miRNA:   3'- -GGUGUCGU-CaaGGUUCUuggAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 45659 0.73 0.509223
Target:  5'- cCCACGGguGcuuggcgUUCCAAG--UCUCGGCCa -3'
miRNA:   3'- -GGUGUCguC-------AAGGUUCuuGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 44069 0.7 0.678731
Target:  5'- gCCGCAgGCGGUgguggaacUCCAAGccuGCCUCcGUCg -3'
miRNA:   3'- -GGUGU-CGUCA--------AGGUUCu--UGGAGuCGG- -5'
18555 5' -51.2 NC_004682.1 + 43876 0.67 0.826369
Target:  5'- cCCGCcuGCGGUacuccUCCAGGAcgguguggacuGCCUCcccugcgggAGCCa -3'
miRNA:   3'- -GGUGu-CGUCA-----AGGUUCU-----------UGGAG---------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 43679 0.68 0.797228
Target:  5'- aCGCAGCccaccAGUU-CAGGAcGCCcCAGCCg -3'
miRNA:   3'- gGUGUCG-----UCAAgGUUCU-UGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43601 0.66 0.878503
Target:  5'- aCCACAGCGugaaccgagccuGUUCCA---GCgUCGGCa -3'
miRNA:   3'- -GGUGUCGU------------CAAGGUucuUGgAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 43485 0.67 0.844725
Target:  5'- gCCGCAG-AGUUCCGcgagcgAGAGCg-CGGCUg -3'
miRNA:   3'- -GGUGUCgUCAAGGU------UCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43146 0.7 0.678731
Target:  5'- gCCACgcuccgguccaGGCGGUcgUCCcGGccuucuuggcGACCUCGGCCa -3'
miRNA:   3'- -GGUG-----------UCGUCA--AGGuUC----------UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 42344 0.69 0.723356
Target:  5'- aUCACcGCG--UCCAGGAACCgcucgCAGUCg -3'
miRNA:   3'- -GGUGuCGUcaAGGUUCUUGGa----GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 42218 0.66 0.870447
Target:  5'- gCAUgAGCugAGUUCCccuGAGCUUCAGCg -3'
miRNA:   3'- gGUG-UCG--UCAAGGuu-CUUGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 41337 0.66 0.886287
Target:  5'- cCCGguGCAGcgUCAGGAucAUCUCGGgCa -3'
miRNA:   3'- -GGUguCGUCaaGGUUCU--UGGAGUCgG- -5'
18555 5' -51.2 NC_004682.1 + 41074 0.74 0.467877
Target:  5'- aCCAguCGGCuc-UCCGAGGaccggaugGCCUCAGCCg -3'
miRNA:   3'- -GGU--GUCGucaAGGUUCU--------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 40674 0.71 0.633345
Target:  5'- aCGCAGCAG--CCu----CCUCAGCCg -3'
miRNA:   3'- gGUGUCGUCaaGGuucuuGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 40537 1.16 0.000868
Target:  5'- gCCACAGCAGUUCCAAGAACCUCAGCCa -3'
miRNA:   3'- -GGUGUCGUCAAGGUUCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 39735 0.68 0.807142
Target:  5'- cCCG-AGCAGUgCgAAGAcgaucACCUCAGCg -3'
miRNA:   3'- -GGUgUCGUCAaGgUUCU-----UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 39580 0.68 0.807142
Target:  5'- uCUGCGGCucGUauUCCuucacGACCUCAGCCc -3'
miRNA:   3'- -GGUGUCGu-CA--AGGuuc--UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 39148 0.68 0.816859
Target:  5'- gCCAUaucaGGCGugauccGUUcaCCAAGAACCUgcaCAGCCg -3'
miRNA:   3'- -GGUG----UCGU------CAA--GGUUCUUGGA---GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.