miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 38012 0.68 0.776859
Target:  5'- uCgACAGCgccuccucGGUgCCGAGGuGCCUCAGCg -3'
miRNA:   3'- -GgUGUCG--------UCAaGGUUCU-UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 44069 0.7 0.678731
Target:  5'- gCCGCAgGCGGUgguggaacUCCAAGccuGCCUCcGUCg -3'
miRNA:   3'- -GGUGU-CGUCA--------AGGUUCu--UGGAGuCGG- -5'
18555 5' -51.2 NC_004682.1 + 43146 0.7 0.678731
Target:  5'- gCCACgcuccgguccaGGCGGUcgUCCcGGccuucuuggcGACCUCGGCCa -3'
miRNA:   3'- -GGUG-----------UCGUCA--AGGuUC----------UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 34883 0.7 0.689989
Target:  5'- -gACAGCgacgAGUUCC-AGAACCcCGGCUc -3'
miRNA:   3'- ggUGUCG----UCAAGGuUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 38535 0.69 0.723356
Target:  5'- gCCGCAGCAGagcgagcgugUUguAGAGCCgUGGCCg -3'
miRNA:   3'- -GGUGUCGUCa---------AGguUCUUGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 17708 0.69 0.75585
Target:  5'- gCUGCAGCAGaUCCAGccGAugauCCcCGGCCu -3'
miRNA:   3'- -GGUGUCGUCaAGGUU--CUu---GGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 8953 0.69 0.75585
Target:  5'- aUCGCAGCGcg-CCAGGAgcuugaggGCUUCGGCUc -3'
miRNA:   3'- -GGUGUCGUcaaGGUUCU--------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20261 0.69 0.75585
Target:  5'- cCCGCguguggAGCAGgucucgUCgGAGAACggCAGCCa -3'
miRNA:   3'- -GGUG------UCGUCa-----AGgUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 33398 0.68 0.776859
Target:  5'- gCGCAGUAGcgCUucuccccguuGGGGGCCUCcugAGCCg -3'
miRNA:   3'- gGUGUCGUCaaGG----------UUCUUGGAG---UCGG- -5'
18555 5' -51.2 NC_004682.1 + 4988 0.7 0.666293
Target:  5'- gCCACAGCGGcUUCCAGccgcagggcuacuGGAUCUCGuucgaccagugcGCCa -3'
miRNA:   3'- -GGUGUCGUC-AAGGUU-------------CUUGGAGU------------CGG- -5'
18555 5' -51.2 NC_004682.1 + 35687 0.71 0.65495
Target:  5'- cCCACAGguGgcgUCCAccggggAGGAUCuugaacuccuccaUCAGCCg -3'
miRNA:   3'- -GGUGUCguCa--AGGU------UCUUGG-------------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 21463 0.71 0.644721
Target:  5'- aCGCcGUGGUUCCuGGGGACCUCcccacaGGCCc -3'
miRNA:   3'- gGUGuCGUCAAGG-UUCUUGGAG------UCGG- -5'
18555 5' -51.2 NC_004682.1 + 36639 0.75 0.398338
Target:  5'- aCUugAGCAGcUUCUu--GACCUCGGCCa -3'
miRNA:   3'- -GGugUCGUC-AAGGuucUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 45659 0.73 0.509223
Target:  5'- cCCACGGguGcuuggcgUUCCAAG--UCUCGGCCa -3'
miRNA:   3'- -GGUGUCguC-------AAGGUUCuuGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 33734 0.73 0.510303
Target:  5'- gCCGgGGCc-UUCUucGGGGCCUCAGCCg -3'
miRNA:   3'- -GGUgUCGucAAGGu-UCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 16994 0.72 0.554252
Target:  5'- -gACGGCGGUcUCCGgggucuucgagcAGGGCCUCAaGCCc -3'
miRNA:   3'- ggUGUCGUCA-AGGU------------UCUUGGAGU-CGG- -5'
18555 5' -51.2 NC_004682.1 + 31472 0.72 0.57328
Target:  5'- uCCAcCAGguGggCCAGGAucuucgugucggugACCuUCGGCCa -3'
miRNA:   3'- -GGU-GUCguCaaGGUUCU--------------UGG-AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 31104 0.71 0.610599
Target:  5'- uCCGCAGCAuGUccUCgGAGAGCUUCucGCUg -3'
miRNA:   3'- -GGUGUCGU-CA--AGgUUCUUGGAGu-CGG- -5'
18555 5' -51.2 NC_004682.1 + 32857 0.71 0.610599
Target:  5'- aCCGCuGGCGGUUCguGGAcGCC-CAGCUc -3'
miRNA:   3'- -GGUG-UCGUCAAGguUCU-UGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 32567 0.71 0.621967
Target:  5'- gCCuCAGCAGUUcgccugCCAGGGaacggaucucgGCgUCAGCCg -3'
miRNA:   3'- -GGuGUCGUCAA------GGUUCU-----------UGgAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.