miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 31128 0.66 0.907955
Target:  5'- uCCuCGGUGGagCCAggcAGAauccACUUCAGCCa -3'
miRNA:   3'- -GGuGUCGUCaaGGU---UCU----UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 27102 0.67 0.835662
Target:  5'- aCC-CAGcCAGgaucUCCAGcaccugauGGACCUCGGUCg -3'
miRNA:   3'- -GGuGUC-GUCa---AGGUU--------CUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 39580 0.68 0.807142
Target:  5'- uCUGCGGCucGUauUCCuucacGACCUCAGCCc -3'
miRNA:   3'- -GGUGUCGu-CA--AGGuuc--UUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 40537 1.16 0.000868
Target:  5'- gCCACAGCAGUUCCAAGAACCUCAGCCa -3'
miRNA:   3'- -GGUGUCGUCAAGGUUCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11004 0.66 0.893795
Target:  5'- uUCGCGGCuGg--CAAGAGCg-CAGCCg -3'
miRNA:   3'- -GGUGUCGuCaagGUUCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 21272 0.66 0.886288
Target:  5'- aCgACAGCAGaucgUUCGAGAccaaCUCGGCg -3'
miRNA:   3'- -GgUGUCGUCa---AGGUUCUug--GAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 43601 0.66 0.878503
Target:  5'- aCCACAGCGugaaccgagccuGUUCCA---GCgUCGGCa -3'
miRNA:   3'- -GGUGUCGU------------CAAGGUucuUGgAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 22033 0.66 0.878503
Target:  5'- aUCGCAGCAGgaCUGAucGCCcuguccgcucUCGGCCu -3'
miRNA:   3'- -GGUGUCGUCaaGGUUcuUGG----------AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20126 0.66 0.869627
Target:  5'- -uGCGGCGGUgcuuccuggCCGAcGAgggccaauugaugGCCUCAGUCg -3'
miRNA:   3'- ggUGUCGUCAa--------GGUU-CU-------------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 24818 0.67 0.835662
Target:  5'- cCUACGGCGGgagUCCGAcgccGGCCUCAucGCg -3'
miRNA:   3'- -GGUGUCGUCa--AGGUUc---UUGGAGU--CGg -5'
18555 5' -51.2 NC_004682.1 + 19034 0.67 0.848284
Target:  5'- aCCACGGUAGUgaUCCGcgucguggagaacgaGGAugACCUCuggGGCUu -3'
miRNA:   3'- -GGUGUCGUCA--AGGU---------------UCU--UGGAG---UCGG- -5'
18555 5' -51.2 NC_004682.1 + 12394 0.66 0.870447
Target:  5'- cCCgACGGUGGgcgugCCAGGAGCacaggcguggCAGCCg -3'
miRNA:   3'- -GG-UGUCGUCaa---GGUUCUUGga--------GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 50490 0.66 0.901019
Target:  5'- gCCGCuugggGGCGGcUCCucgGAGGGCCg-AGCCa -3'
miRNA:   3'- -GGUG-----UCGUCaAGG---UUCUUGGagUCGG- -5'
18555 5' -51.2 NC_004682.1 + 43485 0.67 0.844725
Target:  5'- gCCGCAG-AGUUCCGcgagcgAGAGCg-CGGCUg -3'
miRNA:   3'- -GGUGUCgUCAAGGU------UCUUGgaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20313 0.66 0.901019
Target:  5'- cCCGgAGCGGaaguacgCCAAGAcggugaACUUCGGCa -3'
miRNA:   3'- -GGUgUCGUCaa-----GGUUCU------UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 27183 0.66 0.870447
Target:  5'- cCCGCAGgAGggCCGcAGGcCCgUCGGUCa -3'
miRNA:   3'- -GGUGUCgUCaaGGU-UCUuGG-AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 6978 0.67 0.844725
Target:  5'- aCCGCAGgcggaacucgaCGGUgaUCCAAuGAGCCUUgaagaGGCCc -3'
miRNA:   3'- -GGUGUC-----------GUCA--AGGUU-CUUGGAG-----UCGG- -5'
18555 5' -51.2 NC_004682.1 + 23731 0.67 0.82637
Target:  5'- gCCACGGUcucaccguuugAGcggCCA--GACCUCGGCCc -3'
miRNA:   3'- -GGUGUCG-----------UCaa-GGUucUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 36647 0.66 0.893795
Target:  5'- -uGCGGUAGUcgauguccucgaUCCAGGAGCCcaccuucacgUCAGgCa -3'
miRNA:   3'- ggUGUCGUCA------------AGGUUCUUGG----------AGUCgG- -5'
18555 5' -51.2 NC_004682.1 + 23130 0.66 0.886288
Target:  5'- aCCGuCAGguGaguugcggCCAGGAGCCaCAGCg -3'
miRNA:   3'- -GGU-GUCguCaa------GGUUCUUGGaGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.