miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18555 5' -51.2 NC_004682.1 + 40537 1.16 0.000868
Target:  5'- gCCACAGCAGUUCCAAGAACCUCAGCCa -3'
miRNA:   3'- -GGUGUCGUCAAGGUUCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 12965 0.82 0.162634
Target:  5'- aUCGCGGCGcGUUCuCGGGGuACCUCGGCCa -3'
miRNA:   3'- -GGUGUCGU-CAAG-GUUCU-UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 10821 0.81 0.181982
Target:  5'- gCUACGGuCGGccaCCGAGGGCCUCGGCCu -3'
miRNA:   3'- -GGUGUC-GUCaa-GGUUCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20006 0.78 0.280713
Target:  5'- uCgACAGCAGggacUCCAAGGACCgCuGCCa -3'
miRNA:   3'- -GgUGUCGUCa---AGGUUCUUGGaGuCGG- -5'
18555 5' -51.2 NC_004682.1 + 26217 0.78 0.29568
Target:  5'- aCCGCAGCGGUacgUCCGguAGGucACCUCGGUg -3'
miRNA:   3'- -GGUGUCGUCA---AGGU--UCU--UGGAGUCGg -5'
18555 5' -51.2 NC_004682.1 + 24550 0.77 0.303393
Target:  5'- gCCACuGCGGggCCuguGGAGCCUCucuuGCCc -3'
miRNA:   3'- -GGUGuCGUCaaGGu--UCUUGGAGu---CGG- -5'
18555 5' -51.2 NC_004682.1 + 46750 0.76 0.352903
Target:  5'- aCACGGCAGga-CucGAACCUgCAGCCg -3'
miRNA:   3'- gGUGUCGUCaagGuuCUUGGA-GUCGG- -5'
18555 5' -51.2 NC_004682.1 + 36639 0.75 0.398338
Target:  5'- aCUugAGCAGcUUCUu--GACCUCGGCCa -3'
miRNA:   3'- -GGugUCGUC-AAGGuucUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 41074 0.74 0.467877
Target:  5'- aCCAguCGGCuc-UCCGAGGaccggaugGCCUCAGCCg -3'
miRNA:   3'- -GGU--GUCGucaAGGUUCU--------UGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 20354 0.74 0.467877
Target:  5'- uCUACGGCGGUggugCCAAGAcggugGCCgagCAGaCCg -3'
miRNA:   3'- -GGUGUCGUCAa---GGUUCU-----UGGa--GUC-GG- -5'
18555 5' -51.2 NC_004682.1 + 20915 0.73 0.499538
Target:  5'- -aGCAGCAGgcuaUCCAGGAACUgc-GCCg -3'
miRNA:   3'- ggUGUCGUCa---AGGUUCUUGGaguCGG- -5'
18555 5' -51.2 NC_004682.1 + 45659 0.73 0.509223
Target:  5'- cCCACGGguGcuuggcgUUCCAAG--UCUCGGCCa -3'
miRNA:   3'- -GGUGUCguC-------AAGGUUCuuGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 33734 0.73 0.510303
Target:  5'- gCCGgGGCc-UUCUucGGGGCCUCAGCCg -3'
miRNA:   3'- -GGUgUCGucAAGGu-UCUUGGAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 16994 0.72 0.554252
Target:  5'- -gACGGCGGUcUCCGgggucuucgagcAGGGCCUCAaGCCc -3'
miRNA:   3'- ggUGUCGUCA-AGGU------------UCUUGGAGU-CGG- -5'
18555 5' -51.2 NC_004682.1 + 31472 0.72 0.57328
Target:  5'- uCCAcCAGguGggCCAGGAucuucgugucggugACCuUCGGCCa -3'
miRNA:   3'- -GGU-GUCguCaaGGUUCU--------------UGG-AGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 11135 0.72 0.599251
Target:  5'- cCCGCAGCGGUaccugCUggGGGCCggaugacgCuGCCg -3'
miRNA:   3'- -GGUGUCGUCAa----GGuuCUUGGa-------GuCGG- -5'
18555 5' -51.2 NC_004682.1 + 32857 0.71 0.610599
Target:  5'- aCCGCuGGCGGUUCguGGAcGCC-CAGCUc -3'
miRNA:   3'- -GGUG-UCGUCAAGguUCU-UGGaGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 31104 0.71 0.610599
Target:  5'- uCCGCAGCAuGUccUCgGAGAGCUUCucGCUg -3'
miRNA:   3'- -GGUGUCGU-CA--AGgUUCUUGGAGu-CGG- -5'
18555 5' -51.2 NC_004682.1 + 32567 0.71 0.621967
Target:  5'- gCCuCAGCAGUUcgccugCCAGGGaacggaucucgGCgUCAGCCg -3'
miRNA:   3'- -GGuGUCGUCAA------GGUUCU-----------UGgAGUCGG- -5'
18555 5' -51.2 NC_004682.1 + 40674 0.71 0.633345
Target:  5'- aCGCAGCAG--CCu----CCUCAGCCg -3'
miRNA:   3'- gGUGUCGUCaaGGuucuuGGAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.