miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18556 3' -54.2 NC_004682.1 + 18338 0.85 0.059992
Target:  5'- gGCCcguuCUCGGGCCGAGGCUgGGugAGCu -3'
miRNA:   3'- -UGGu---GAGCUUGGCUUCGAgCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 18960 0.75 0.270975
Target:  5'- cGCCAaggagGGGCUGAAGUUCGGugAGCa -3'
miRNA:   3'- -UGGUgag--CUUGGCUUCGAGCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 21316 0.68 0.640578
Target:  5'- gACaACUCGGGCUGggGCagugagaccgccuUCGG-CGGCu -3'
miRNA:   3'- -UGgUGAGCUUGGCuuCG-------------AGCCuGUCG- -5'
18556 3' -54.2 NC_004682.1 + 21703 0.66 0.781264
Target:  5'- cGCCgaACUCGAACUGGAGaacgccgaaCUCcGGGCgaAGCu -3'
miRNA:   3'- -UGG--UGAGCUUGGCUUC---------GAG-CCUG--UCG- -5'
18556 3' -54.2 NC_004682.1 + 25188 0.68 0.630579
Target:  5'- -gUACcCGGACCccaguGGAGCgccCGGACAGCg -3'
miRNA:   3'- ugGUGaGCUUGG-----CUUCGa--GCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 25568 0.66 0.739964
Target:  5'- cGCCACUgGGccacGCCGuGGGCcuugacgCGGugGGCu -3'
miRNA:   3'- -UGGUGAgCU----UGGC-UUCGa------GCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 28093 0.7 0.521085
Target:  5'- -aCGCUCGGGCgUGGcuGCUCGcGGCGGCg -3'
miRNA:   3'- ugGUGAGCUUG-GCUu-CGAGC-CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 29925 0.68 0.65279
Target:  5'- cACCACuUCGcaGGCCGAagaugauccacAGCUUGGggaacuGCAGCu -3'
miRNA:   3'- -UGGUG-AGC--UUGGCU-----------UCGAGCC------UGUCG- -5'
18556 3' -54.2 NC_004682.1 + 30373 0.68 0.641689
Target:  5'- gGCuCGcCUCGcGCUGGAGCUUGGcgcuCAGCc -3'
miRNA:   3'- -UG-GU-GAGCuUGGCUUCGAGCCu---GUCG- -5'
18556 3' -54.2 NC_004682.1 + 31986 0.83 0.082631
Target:  5'- gGCCAUcUGGACCGGcuGCUCGGGCGGCg -3'
miRNA:   3'- -UGGUGaGCUUGGCUu-CGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 33052 0.79 0.15009
Target:  5'- cCCGCgu--GCCGggGUUCGGACGGCu -3'
miRNA:   3'- uGGUGagcuUGGCuuCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 33818 0.73 0.339503
Target:  5'- uCUGCUCGAACUGggGCUUGaGGCccuGCu -3'
miRNA:   3'- uGGUGAGCUUGGCuuCGAGC-CUGu--CG- -5'
18556 3' -54.2 NC_004682.1 + 34464 0.71 0.458931
Target:  5'- --aGCUCGcGCCgGAAGUUCGaGACGGCc -3'
miRNA:   3'- uggUGAGCuUGG-CUUCGAGC-CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 34550 0.67 0.701255
Target:  5'- aGCCACUUGAAcuccucguucguCCGGGcCUCGGAguacuuccauccgcaCAGCg -3'
miRNA:   3'- -UGGUGAGCUU------------GGCUUcGAGCCU---------------GUCG- -5'
18556 3' -54.2 NC_004682.1 + 36113 0.7 0.499965
Target:  5'- cACCACcgUCGaAGCCGAA-CUCGGGCAuGUc -3'
miRNA:   3'- -UGGUG--AGC-UUGGCUUcGAGCCUGU-CG- -5'
18556 3' -54.2 NC_004682.1 + 36143 0.66 0.781264
Target:  5'- cGCCACgCGAcgugugGCCGAugcugucccAGC-CGGuCGGCg -3'
miRNA:   3'- -UGGUGaGCU------UGGCU---------UCGaGCCuGUCG- -5'
18556 3' -54.2 NC_004682.1 + 36834 0.66 0.729332
Target:  5'- uGCCGC-CgGGGCCGAAcacacCGGACGGCu -3'
miRNA:   3'- -UGGUGaG-CUUGGCUUcga--GCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 38019 0.67 0.69689
Target:  5'- cGCCucCUCGGuGCCGAGGUgccucagCGccGACAGCg -3'
miRNA:   3'- -UGGu-GAGCU-UGGCUUCGa------GC--CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 38317 0.67 0.674922
Target:  5'- gACCAUgaacgCGAACUc-AGCUucgcaaCGGACAGCg -3'
miRNA:   3'- -UGGUGa----GCUUGGcuUCGA------GCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 40407 1.12 0.00073
Target:  5'- aACCACUCGAACCGAAGCUCGGACAGCa -3'
miRNA:   3'- -UGGUGAGCUUGGCUUCGAGCCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.