miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18556 3' -54.2 NC_004682.1 + 1046 0.73 0.379991
Target:  5'- cGCUACUaCGAGCCGuccgacuggcaguacGCcCGGACAGCg -3'
miRNA:   3'- -UGGUGA-GCUUGGCuu-------------CGaGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 2944 0.71 0.439096
Target:  5'- aACCugaUCGAcuuCUGggGCgCGGGCGGCg -3'
miRNA:   3'- -UGGug-AGCUu--GGCuuCGaGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 3173 0.7 0.531776
Target:  5'- cACCACggCGGGCCaGGGCgCGGGCAaccGCg -3'
miRNA:   3'- -UGGUGa-GCUUGGcUUCGaGCCUGU---CG- -5'
18556 3' -54.2 NC_004682.1 + 4734 0.66 0.78026
Target:  5'- gGCCACgaaguggaUCGAguaccacGCCGAAGCcgacgacugCGGAgacCAGCa -3'
miRNA:   3'- -UGGUG--------AGCU-------UGGCUUCGa--------GCCU---GUCG- -5'
18556 3' -54.2 NC_004682.1 + 4875 0.77 0.202847
Target:  5'- aGCCACgCGGAgUGAagGGCUCGGugAGCc -3'
miRNA:   3'- -UGGUGaGCUUgGCU--UCGAGCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 4949 0.69 0.608374
Target:  5'- gGCUACgaCGAcacccCCGguGCUCGGGCGGUc -3'
miRNA:   3'- -UGGUGa-GCUu----GGCuuCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 5417 0.66 0.739964
Target:  5'- gACCACucaUCGAGCgGAGGUgaggCGcGAaaCAGCa -3'
miRNA:   3'- -UGGUG---AGCUUGgCUUCGa---GC-CU--GUCG- -5'
18556 3' -54.2 NC_004682.1 + 5864 0.75 0.295471
Target:  5'- uGCCACuggcuguugaguacgUCGAGCgCGuuGCUCGcGACGGCg -3'
miRNA:   3'- -UGGUG---------------AGCUUG-GCuuCGAGC-CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 6334 0.67 0.717523
Target:  5'- cCCGCUgGGuccgggacuccccGCCGAcacGGCgCGGGCGGUg -3'
miRNA:   3'- uGGUGAgCU-------------UGGCU---UCGaGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 6857 0.67 0.674922
Target:  5'- gGCCcgaACUcCGuugugucccAACUGAucgAGCUUGGACAGCg -3'
miRNA:   3'- -UGG---UGA-GC---------UUGGCU---UCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 7285 0.68 0.630579
Target:  5'- gGCUACaUCGAcACCGu-GCUgagGGACAGCg -3'
miRNA:   3'- -UGGUG-AGCU-UGGCuuCGAg--CCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 7696 0.74 0.315342
Target:  5'- gACCGCcUGGACCGGAGCgUGG-CGGCu -3'
miRNA:   3'- -UGGUGaGCUUGGCUUCGaGCCuGUCG- -5'
18556 3' -54.2 NC_004682.1 + 8058 0.68 0.630579
Target:  5'- uCCACaUgGGACCGAAGCcCGGuCuGCc -3'
miRNA:   3'- uGGUG-AgCUUGGCUUCGaGCCuGuCG- -5'
18556 3' -54.2 NC_004682.1 + 9436 0.67 0.674922
Target:  5'- uUCGCUCGGucACCGAcgcAGCUgccCGGAC-GCu -3'
miRNA:   3'- uGGUGAGCU--UGGCU---UCGA---GCCUGuCG- -5'
18556 3' -54.2 NC_004682.1 + 11006 0.75 0.270974
Target:  5'- cGCgGCUggcaagagCGcAGCCGAGGCaUCGGGCGGCg -3'
miRNA:   3'- -UGgUGA--------GC-UUGGCUUCG-AGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 11509 0.68 0.630579
Target:  5'- cCCACUCa-----GGGCUCGGGCAGCc -3'
miRNA:   3'- uGGUGAGcuuggcUUCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 14670 0.8 0.138032
Target:  5'- gGCCugUgGAcGCCGAccGGCUgGGACAGCa -3'
miRNA:   3'- -UGGugAgCU-UGGCU--UCGAgCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 15238 0.66 0.778245
Target:  5'- aGCC-CUCGGACCacuucGAguucacguucaugcGGCUCauggaGGGCGGCg -3'
miRNA:   3'- -UGGuGAGCUUGG-----CU--------------UCGAG-----CCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 15317 0.71 0.479233
Target:  5'- cGCCugUCaAGCUGGAGCUgGGA-GGCg -3'
miRNA:   3'- -UGGugAGcUUGGCUUCGAgCCUgUCG- -5'
18556 3' -54.2 NC_004682.1 + 15944 0.72 0.410287
Target:  5'- cGCCAacggCGAGCCGggGUUCuGGACucgucGCu -3'
miRNA:   3'- -UGGUga--GCUUGGCuuCGAG-CCUGu----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.